Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0692 ATGGAGTCCCTGCAAACAGCTCGTGTATTTTCCTACAATTCGTCTCTGAATCTGCATTTACAGAAAGCTAGTAGTGATTTCGGATTGATCGGGCGAGTAGGTTTCGTTCCTCTGAGGAGAAGTAGTCTTCTTCTTCGCGACTCTCTGAGGCTGAGAGGAGCGATTTCAAGTAGAACAGAAGGTAGGGGTGTTGCTTCTTCCGTTAAATCTTCTTCGGTAGCTGAGCATGGAAAGGAGGAAAAAAGTCTTATTTTGAGCACCGAGACAGATGATTCTGGCTCCGTAATCGGCTTTAATTTGATTCCTCGCTCCGGTGAAAATGATGTCAGCGACTCTCATGAAGTTGAGACACCAGAAAAAGTAAAAGAAACTGAGGACTTAGGAGAAGATAAAATCCGGACAGCAGTAAAATACAATATTGTTTTTGTAGCTGCTGAAGCAGCACCATACTCAAAGACAGGTGGCTTAGGAGATGTTTGTGGTTCTTTGCCTATAGCGTTAGCTGCTCGTGGACACAGGGTTATGGTAATATCTCCTAGGTACCTAAATGGAACTGCTGCTGATGAGAAGTTTTCTGGTGCATTCGATATGGATTGTCGCATCAATGTATCTTGCTTTGGAGGGTTGCAAGAAGTAGCCTTCTTCCATGAATACAGACAAGGTGTTGATTGGGTGTTTGTGGATCACACTTCATACCATAGGCCTGGAAACCCATATGGGGATGCTTGTGGTGCTTTTGGTGACAATCAGTTTCGGTTCACTTTACTTTGCCATGCAGCATGTGAAGCTCCATTGGTGCTTCCATTAGGAGGATTCACCTTTGGAGAAAAATGTTTGTTCCTGGTCAATGACTGGCATGCTGGCCTTGTTCCCGTACTTTTGGCAGCCAAGTATCGTCCATATGGAGTTTATAAGGATGCCCGGAGTATTCTTGTAATACACAACCTAGCACATCAGGGAGTCGAACCAGCAGTGACATACAAGAATTTGGGACTACCGCTCGAGTGGTATGGAGCCTTGGGATGGGTGTTTCCAGAGTGGGCACGAACGCATGCTCTTGATACAGGTGAAGCTGTCAATGTTCTGAAGGGTGCAATTGTGACAGCTGACCGGATACTAACAGTTAGCAAGGGGTATTCCTGGGAGATAACAACTATGGAAGGTGGATATGGTCTTGACGAACTATTAAGCAGTCGAAAGAGTGTTCTTACTGGGATTGTGAATGGCATAGATATTACTGACTGGGACCCCTCTGTGGATAAGTATATAGCGTCTCATTATTCAGTTGATGATCTTTCTGGAAAGGTTGAATGCAAGATTGCCCTGCAAAAGGAGTTAGGTCTTCCGATTAGGCCTGAATGCCCATTGATTGGTTTCGTTGGACGACTGGAGTACCAGAAAGGGATTGCCTTGATTCAACAAGCTATGCCGGACCTCTTAATAGACGATGCACAATTTGTAATGCTGGGTTCTGGTGATTCAAGGTTTGAGGACTGGATGAGAGCAACAGAGGCATATTACAAAGAAAAGTTCCGTGGTTGGGTTGGATTTAATGTTCCAATTTCTCATAAAATGACTGCAGGCTGTGACATACTGTTGATGCCATCAATATTTGAACCCTGTGGGCTAAATCAATTGTACGCAATGAGATATGGAACTGTCCCTGTAGTTCATCAAACTGGTGGACTTAGAGATACAGTAGAGAATTTCAATCCTTTTGCTCAAGAGGGCAGTGGTGAAGGTACAGGGTGGGCTTTTACTCCAACAACAAAAGAGAGTATGTTGGCAGCATTAAAATTAGCAATTGAGACTTACAGAATGCATAAATCTTCTTGGGAGGGATTGATGAGAAGAGGCATGGAGAAGGACTACACCTGGGAAAATTCTGCAGATCAATATGAACAGATCTTTCAATGGGCCTTCATCGACCCGCCATATATTAATTAG 1947 43.97 MESLQTARVFSYNSSLNLHLQKASSDFGLIGRVGFVPLRRSSLLLRDSLRLRGAISSRTEGRGVASSVKSSSVAEHGKEEKSLILSTETDDSGSVIGFNLIPRSGENDVSDSHEVETPEKVKETEDLGEDKIRTAVKYNIVFVAAEAAPYSKTGGLGDVCGSLPIALAARGHRVMVISPRYLNGTAADEKFSGAFDMDCRINVSCFGGLQEVAFFHEYRQGVDWVFVDHTSYHRPGNPYGDACGAFGDNQFRFTLLCHAACEAPLVLPLGGFTFGEKCLFLVNDWHAGLVPVLLAAKYRPYGVYKDARSILVIHNLAHQGVEPAVTYKNLGLPLEWYGALGWVFPEWARTHALDTGEAVNVLKGAIVTADRILTVSKGYSWEITTMEGGYGLDELLSSRKSVLTGIVNGIDITDWDPSVDKYIASHYSVDDLSGKVECKIALQKELGLPIRPECPLIGFVGRLEYQKGIALIQQAMPDLLIDDAQFVMLGSGDSRFEDWMRATEAYYKEKFRGWVGFNVPISHKMTAGCDILLMPSIFEPCGLNQLYAMRYGTVPVVHQTGGLRDTVENFNPFAQEGSGEGTGWAFTPTTKESMLAALKLAIETYRMHKSSWEGLMRRGMEKDYTWENSADQYEQIFQWAFIDPPYIN 648
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2959973 2966066 + Conep05aG0071600.1 Cone5ag0692 437710

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0692 648 Pfam Glycosyl transferases group 1 451 605 IPR001296 GO:0016757(InterPro)
Cone5ag0692 648 NCBIfam glycogen/starch synthase, ADP-glucose type 139 638 IPR011835 GO:0004373(InterPro)
Cone5ag0692 648 CDD GT5_Glycogen_synthase_DULL1-like 139 639 - -
Cone5ag0692 648 FunFam Starch synthase, chloroplastic/amyloplastic 139 424 - -
Cone5ag0692 648 PANTHER GRANULE-BOUND STARCH SYNTHASE 1, CHLOROPLASTIC/AMYLOPLASTIC 122 646 - GO:0009507(PANTHER)
Cone5ag0692 648 MobiDBLite consensus disorder prediction 107 125 - -
Cone5ag0692 648 MobiDBLite consensus disorder prediction 104 125 - -
Cone5ag0692 648 Hamap Glycogen synthase [glgA]. 138 640 IPR011835 GO:0004373(InterPro)
Cone5ag0692 648 Gene3D Glycogen Phosphorylase B; 412 623 - -
Cone5ag0692 648 Pfam Starch synthase catalytic domain 139 397 IPR013534 -
Cone5ag0692 648 Gene3D Glycogen Phosphorylase B; 158 637 - -
Cone5ag0692 648 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 138 640 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0692 K00703 - - cit:102630022 971.074
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone2ag0196 Cone-Chr2:1037200 Cone5ag0692 Cone-Chr5:2959973 4.46E-154 dispersed
Cone5ag0692 Cone-Chr5:2959973 Cone8ag0561 Cone-Chr8:4346564 1.29E-116 dispersed
Cone1ag0986 Cone-Chr1:54937975 Cone5ag0692 Cone-Chr5:2959973 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1036 Blo06g01059 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone1ag0986 Cone5ag0692 . . . . . . . . . Bda15g00786 . Bpe12g00350 Bma08g00388 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016620 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 7