Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0699 ATGGAGAGGTCTAGATCTAAGCGAAATTACTACTACGACCACCAGGATTATGACCAGGAGGCGGCGGTGGGTCGGACCCGGCCGCGGTACAACCACCACTACCAGAACAATCTCCATCGCCACCGTGGCAGTGGAGCCCAGCAGCAGCAGCGACCCGCTAATAAACCTCAAGACAATAATCTTATGGTCACTACGAATTATCGAATACTCTGCCATGACATTAAGGCCGGAGGAGTAATCGGCAAGTCAGGGACTATCATAAAGTCGATTAGGCAGCATACCGGCGCGTGGATCAACGTGCACGAGCTGATTTCCGGCGATGAGGAGAGGATCATTGAGATATCCGACACTCGCCGGAAAGACCAGGAGGGTAGAATGCCATCTTTCTCTCCTGCCCAGGAAGCTCTTCTGTTGATTCACGAAAGGATTTTAGAAAGTGATGTTGTTGGTGGTGGGTTTTACGGCGGCGGCGGCGGTGGTGAGGAAGAGGATGACTACGGCGGAGTTAGAGGTGGTGGTGGTGGGAACAGAGTGGCGACGAGACTGGTTGTGTCGAGAATGCATGTGGGTTGTTTGCTTGGGAAAGGAGGGAAGATAATTGAGCAAATGAGGATGGAGACTAAGACCCAGATTAGAATACTTCCTAGAGATCATAACTTACCTCGTTGCGTTTCAATGTCAGAGGAGATTGTTCAGGTTGTGGGAGATGTGAATGCTGTAAAGAATGCTATAGTGATAATTTCATCGCGCTTGAGGGAGAGTCAGCATCGAGATCGGTCCCACTTCTATCCACGTCAGCATTCTCCCGAACGGTTTTTCCCTCCTGATGACGATTACATTCCACATGCCAGCAATCCACAACAATGCCGTGGCCCCATAGACGGTCCTGCATTCAGATCACGAATGTCTTCTACGCATAACGCTAGAAACAATAATTACAGTCCTCGCCCCTCTGGTTTCCCGTTTGATTCTGGGGACGATCCTATGGTTGAAGAATCTCAACCATATTATAATGTGGACCTTGTGTTTAGAATACTTTGTCCGGTTGAAAAAGTTGATAGTGTTGTTGGAGAATCAGATAGTATAATCGAATTGTTACAAAATGATATTGGTGTTGATGTTAGGGTTTCTGAACCTATTTCCGGTTCTGAAGAGCAGATTATCATTGTTTCCTCTGGAGAGGGGCCAGATGACGAGCTCTTTCCGGCTCAAGAAGCATTATTGCACATCCAAAGTCGAATTGTGAATCTTATTCCGGATAAGGATAATATTATAACAACTAGGTTGCTTGTCCCATCTAGTAATATTGGATGTTTAGAGGGAAGAGATGGATCATTATCTGAGATGAAGAGGTTAACAGGTGCAAATGTACTAATTCTTCCAAGAGAAGAGCTTCCTGCTTGTGTTTCCGGAAATGATGAGCTTGTTCAGATTGTAGGGGAGATAAGAGCAGCTAGAGAAGCTCTTGTTGAGGTGACATGTCGATTAAGAAGTTATCAATATAGGGAGCTTTCTTCTCAACAGGATGATCTGACTCCTCCTCCTGTTTCAGTACAAGGTTCTATGGCCTTGGACTCATCTTCTCCTCCTAGTATCAATGCCATTGTACACGATCCCAGAACTACACCACAGTCCCTAAAGAATGCTGGTGGGCCCAGCACTGAGACAAGTAAGCAGAATGAAATTGACCGGCGGGAAGATGTGCCTAGCACATTAAATAGGATTTCTGTTCCACTCGTGACTAGAAGCACCCTTGAAGTTATGATACCAGACCATGCAGCTACTAAACTCATAACTAAATCGAGAAACAAGCTCGCTCAGATCAGTGAGTTGTCAGGTGCTAATGTAACACTAGTAGAAGATAGACCAGAGGAAACACAAAAGATTATTCAAATATCGGGTACACCCGAGCAGGCAGAGCGAGCCCAAAGCTTGCTTCAGGGCTTTATCTTAAGCACGCAAGAAGATGGCCCTTAA 1977 46.13 MERSRSKRNYYYDHQDYDQEAAVGRTRPRYNHHYQNNLHRHRGSGAQQQQRPANKPQDNNLMVTTNYRILCHDIKAGGVIGKSGTIIKSIRQHTGAWINVHELISGDEERIIEISDTRRKDQEGRMPSFSPAQEALLLIHERILESDVVGGGFYGGGGGGEEEDDYGGVRGGGGGNRVATRLVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHNLPRCVSMSEEIVQVVGDVNAVKNAIVIISSRLRESQHRDRSHFYPRQHSPERFFPPDDDYIPHASNPQQCRGPIDGPAFRSRMSSTHNARNNNYSPRPSGFPFDSGDDPMVEESQPYYNVDLVFRILCPVEKVDSVVGESDSIIELLQNDIGVDVRVSEPISGSEEQIIIVSSGEGPDDELFPAQEALLHIQSRIVNLIPDKDNIITTRLLVPSSNIGCLEGRDGSLSEMKRLTGANVLILPREELPACVSGNDELVQIVGEIRAAREALVEVTCRLRSYQYRELSSQQDDLTPPPVSVQGSMALDSSSPPSINAIVHDPRTTPQSLKNAGGPSTETSKQNEIDRREDVPSTLNRISVPLVTRSTLEVMIPDHAATKLITKSRNKLAQISELSGANVTLVEDRPEETQKIIQISGTPEQAERAQSLLQGFILSTQEDGP 658
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2999079 3001943 - Conep05aG0072300.1 Cone5ag0699 437717

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0699 658 MobiDBLite consensus disorder prediction 503 557 - -
Cone5ag0699 658 SMART kh_6 339 412 IPR004087 GO:0003676(InterPro)
Cone5ag0699 658 SMART kh_6 63 144 IPR004087 GO:0003676(InterPro)
Cone5ag0699 658 SMART kh_6 176 252 IPR004087 GO:0003676(InterPro)
Cone5ag0699 658 SMART kh_6 581 651 IPR004087 GO:0003676(InterPro)
Cone5ag0699 658 SMART kh_6 423 497 IPR004087 GO:0003676(InterPro)
Cone5ag0699 658 ProSiteProfiles Type-1 KH domain profile. 177 247 - -
Cone5ag0699 658 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 561 645 - GO:0003729(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0010468(PANTHER)
Cone5ag0699 658 ProSiteProfiles Type-1 KH domain profile. 582 646 - -
Cone5ag0699 658 Gene3D K Homology domain, type 1 64 146 IPR036612 GO:0003723(InterPro)
Cone5ag0699 658 Gene3D - 340 503 - -
Cone5ag0699 658 MobiDBLite consensus disorder prediction 503 566 - -
Cone5ag0699 658 MobiDBLite consensus disorder prediction 40 60 - -
Cone5ag0699 658 Pfam KH domain 584 647 IPR004088 GO:0003723(InterPro)
Cone5ag0699 658 Pfam KH domain 426 491 IPR004088 GO:0003723(InterPro)
Cone5ag0699 658 Pfam KH domain 181 247 IPR004088 GO:0003723(InterPro)
Cone5ag0699 658 Pfam KH domain 67 115 IPR004088 GO:0003723(InterPro)
Cone5ag0699 658 MobiDBLite consensus disorder prediction 305 325 - -
Cone5ag0699 658 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 334 407 IPR036612 GO:0003723(InterPro)
Cone5ag0699 658 MobiDBLite consensus disorder prediction 1 60 - -
Cone5ag0699 658 Gene3D K Homology domain, type 1 581 653 IPR036612 GO:0003723(InterPro)
Cone5ag0699 658 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 576 652 IPR036612 GO:0003723(InterPro)
Cone5ag0699 658 CDD KH-I_PEPPER_rpt2_like 426 497 - -
Cone5ag0699 658 ProSiteProfiles Type-1 KH domain profile. 64 136 - -
Cone5ag0699 658 ProSiteProfiles Type-1 KH domain profile. 424 492 - -
Cone5ag0699 658 CDD KH-I_PEPPER_rpt1_like 64 137 - -
Cone5ag0699 658 CDD KH-I_PEPPER_rpt2_like 180 252 - -
Cone5ag0699 658 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 417 503 IPR036612 GO:0003723(InterPro)
Cone5ag0699 658 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 64 116 IPR036612 GO:0003723(InterPro)
Cone5ag0699 658 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 175 258 IPR036612 GO:0003723(InterPro)
Cone5ag0699 658 Gene3D K Homology domain, type 1 174 256 IPR036612 GO:0003723(InterPro)
Cone5ag0699 658 MobiDBLite consensus disorder prediction 1 27 - -
Cone5ag0699 658 CDD KH-I_PEPPER_rpt1_like 340 408 - -
Cone5ag0699 658 ProSiteProfiles Type-1 KH domain profile. 340 407 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0699 K21444 - - csv:101217605 875.93
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag0699 Cone-Chr5:2999079 Cone8ag1030 Cone-Chr8:9536163 2.43E-53 dispersed
Cone1ag0995 Cone-Chr1:54985322 Cone5ag0699 Cone-Chr5:2999079 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1025 . . . . Bpe03g00230 . . . Cmo16g00045 . . . . . Sed07g0871 . Cpe14g00031 Bhi01g01505 Tan01g0081 Cmetu06g1355 . Hepe07g0050 Mch10g0048 . . . . . . . . Cone1ag0995 Cone5ag0699 . . . . . Cme06g01156 Blo07g00331 . . . . . . . . . . Cma16g00038 Cma18g01323 Car16g00038 Car18g01235 . . . . . . . . . Cla05g00979 Cam05g1071 . . . . Cre05g1090 . Csa03g01974 Chy06g01186 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007315 0 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 2 1 37