Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0712 ATGGAGGAATCCGTACGGAAAGTACTTTACGAGACGCGTCGTCACGCTTCGAGGCCTTACGTTCCCAGCTATCCTCCTCAACAGGCAAATCAGAGGGGTAGCAGAAACATTCTATCCTTGTTTCCAATTCGAGCCATAAACCAACTTAAGGAGAAATGGAGCGGATATAACCAACCAAGGAACACAAAAAAGTTGATATCCTTATTTGTTTCTCCAAGAGGTGAGCGTGTGGCTGTGGCTGCTGGAAATCAGATAACAATTTTGCAGGAGGAGGATGACTACCAGAACCCATGTGGCATTTTTACCAATAACAACCTTGCCACATTTAAAGTGGGCACCTGGTCGGAAAGTCATGACGTTCTTGGAGTTGTTGATGACACTGATACACTATATTTTGTCAAAGTGAATGGTGAAGAGATTACAAGAATTACAAGAAAGCACTTAAAAGTATCTTTACCAATTATTGGCCTGATTGCACAGGAGGACTTCGACTCGCAGAAAAATTTTATGTGTAGCTTCAGTATTTTTACATCAAATGGTTACCTTCAGCATTTGGAGATCAGTAGGGAGCCAAATATATCTATTTCCTCAGCTTGTGCCTCAGACAGTGGCTTAAATCCAAAAGGCCAATTTCCTAATGTAGTTTTCTGCATCGATTACTATACTGACCTTTCTTTGTTAGCTATCGCCGGTAGCTCAGGATCATGTTATCTTTCTCTTTGGCGTAAAAGCGGAATACTTGATTTCAAGCAGCTGGTCTCTCTTCACTTTGATGGTTCATATTCCTTGCCAAGGGGAGATAGTGCTCAGGTGTCATATCCAAAGCTACGAATTTCGCAACAGGCTCAATTCATTGGCACCCTGGATGTGACAGGACGTTTGTATATTTTCAAGGTTGATGAAGAGCACTTTACCGTATCACTTTTTTCACCTAACGAGAGATTTGATTCTCAGGTTAGCAATAATATTTTAAATGGGGGAAAGTATTTTGTAGAAGATGTTTTGGATTTTACTTGGTGGACCTCTCATATAATTACTATTGCAAAGAGGAGCGGTGTTATCACTATGCTTGACATCCTTAGTGGTAAAAAAGTTCTGGGTGATGGTCCAGCTTATTCTATGCCTGTTTTAGAAAGTGTACAAAAAAGTCAAGGTCACCTCTTTCTTTTGGAGAGTACAACAAGTGAAGTATGTAGTCCACCTAAAGATGGGGTACCTGATGACTTCCAGCACACTGATCAGATTAGGGGAGAAATGTTTAGTCAATACGACATGTCCAAGTTGCAATGGAGTTTGATATCATTCTCTGAGAGATCTGTTGCAGAAATGTATAATGTCTTAATTACCAATGGGAAATATAAGGATGCTTTAGACTTTGCTGATTGTTATGGACTAGATAAAGATAAGGCTCTAAAGTCACAATGGTTGCAGTCGGGACACGGACTGAAGGAAATAGATACACTTCTTTCAGATATCAAGGATGAAGCTTTTGTCCTTTCTGAATGTGTAGATAAAGCTGGACCAACAGAAGATGCTGTTAAGGCTCTTCTTGCTTATGGGCTGCGCCTAACTAACCAATATTTGTTTACTAAAGCAGAAGAGGAATCTAGCCAGATTTGGAATTTCCGCTTAGCTAGACTTCGTTTATTGCAATTTAAAGACAGATTGGAGACATTTCTTGGGATAAATATGGGCAGGTTTTCTGTCCAGGAATACAGCAAATTTCGTGTTATGCCTATTAACGAAACTGCTGTCACTCTTGCCCAAAGTGGAAAAATCGGGGCCTTAAACCTCCTGTTCAAGCGTCATCCATATTCGTTGAATCCCTTCATGCTAGAGATATTAGCTGCCATCCCAGAAACAGTTCCCATACAAACTTACTCGCAGCTTCTTCCTGGAAGGTCTCCGCCTGATATTGTGGTTGTGAGGGAAGCAGATTGGGTTGAATGTGAGAAGATGGTGAACTTTATAAATAGACTGCCTGATAATTATGAGATTGACATCCAGATCAGAACTGAACCCATTATCAAGCAAAGTGTAGGGCTTTTCTGGCCATCAATCAACGAACTTACAGTATGGTTCTCAAATAGAGCAAGAGATATTGACACTTTGAGTGGACAGCTAGACAATTGCCTCTGTTTGCTTGACTTTGCTAATCGCAAAGGCATATTTGAGTTGAAGCAGTTCCACGATGACATCTCGTGTTTTCACCAACTTATATATTCTGATGATGGCAACAATAATATTAGTGTCAATCTTATCACTTGGGAGGAGCTATCTCCTTATGATAAATTCAAAATGATGCTTAATGGTGTCAAAGAAGAAAATGTCGTCCGAAGATTGCTTGATACAGCCATTCCATTTATGCACAAAAGGCTTCATGGTATACCCTTAAGTCCTCAAAATCAGGGGACAGACACCAATATTTGGGCTGGCGATGACCGGGATGAATCATTTCTAGTTAGATGGATGAAAGAAATAGCCATGCAGAATAAGTTGGACATGTGTTTAATTGTAATCGAGGAAGGATGCAGAGATATTGAAAATAATGGATTCTTTACAAATGAGTTTGAAGCAGTAGAGAGTGCTTTGCAGTGTATATACTTGTGCACTCTTACGGATAAGTGGAATATAATGGCAGGCATTTTGTCAAAGCTTCCACAAATGCAAGATACCGAACCAGTTGAGGACCTCGAAAGGAGGCTCAGGCTGGTGGAGGGCCACATTGAAGCAGGGAGGCTTTTGTCATTTTACCAGGTGCCGAAGCCAATAAATTTTTTCCTCGAGGTTCATTCAGATGAAAAAGGTGTAAAACAAATTCTTCGCCTTATACTCTCAAAATATATTCGACAACAGCCTGGCCGATCAGATAATGACTGGGCAAACATGTGGCGTGATATGCAGTGCTTGAGGGAGAAAGCATTTCCTTTTCTGGACCTGGAGTATATGTTGATTGAATTCTGCAGGGGATTGCTAAAAGCCGGTAGATTTTCTCTTGCAAGGAATTATTTAAAGGGTACAGGTTCAGTTCCTTTGGCAGCAGCGAAAGCTGAAAAACTTGTTATTCAAGCAGCTAGGGAGTATTTTTTCTCAGCTTCAAGTCTTAGTTGTGCTGAAATATGGAAGGCAAAGGAGTGTCTGGATTTATTCCCAAGTAGCAGAAATGTCAAAGCAGAGGTTGATATCATTGATGCACTCACGGTTAGACTACCTAGACTCGGGGTGACTCTTCTACCCATGCAATTCAGGCAAATCAAAGATCCAATGGAAATTATCAAAATGGCAATCTCAAGTAATACTGGAGCTTATTTGCATGTAGATGAACTCATTGAGGTCGCCAAATTTCTTGGAATGAATACCCTTGATGATGTTTCGACCATTGAGGAGGCTATAGCTAGAGAGGCTGCAGTTGCTGGTGATCTGCAACTGGCGTTTGATCTCTGCCTTGTTTTATCTAAGAAAGGACATGGTCCGGTTTGGGACTTATGTGCTGCGATAGCAAGGGGTCCTGCCCTTGAAAACATGGATATAAATTCTAGAAAGCAACTTCTAGGTTTTGCTTTGAGCCATTGTGATGAAGAATCCATTTCTGAGCTCCTTAATGCATGGAAAGACTTTGATATGCTAGGGCAGTGTGAGACATTGGTGATGTTAACGGGGACAAGTCCTCCCAACTTCTTAGTTCAAAATTCCTCTACATTGTTTCCAGTTCACAATACTCAAAATGTTGGTGACTCGACAACTTCTTTTGGACTGGTTGAAGGCATAATAGGTGAAGATCGAGAAGTTCATTTGGATAAAATAAAAGAGAGAATATATGCTGTTGCCAAAATCTCACCCATTGAGAACAAAAACAATTTAGAATCATTTTTGTTAGAAAATGGTAAAATTTTGTCTTTCGCTGCCTTACAACTCCCTTGGTTGGTTGAATTGAGTACAAAGGAAGACGGTGGCAAGAAATTGTTTCCTGGCATGATTCCAGGAAAGCAATATGTGAGTCTAAAAACGCAGGTTATTGTGACTATCTTGTCTTGGTTAGCAAGAAATGGTTTTGTCCCCACAGATAACTTAATATCCTCTCTGGCAAAATCAGTGGTTGCTCCGCCTGTTACTAAAGAGGAAGACTTACTTGGCTGCGCTTTCCTGTTGAATCTTGTGGATGCCTTTAATGGGGTCGAAGTTATAGAAGAGCAATTGGGAGCTAGAGAAAATTACCGTGAAATTTCCAGCATCATGAATGTAGGAATGACGTACTCTTTGTTACACAATTCTTCAGTAGAGTGTGGGAGCGCTTCTCGGAGGAGAGAGTTGCTACTGCAAAAGTTCAAAGAAAAGCACACATCATCCACCTCTGAGGACAAAGAAAAAGGCAAAGTACAATCCACATTTTGGAGGGAGTGGAAACTGAAGTTAGAAGAACAAAGGCGTGCAGCAGATCGTTCGAGAACACTGGAGAATATAATTCCCGGGGTCGAAACTGCACGTTTCTTGTCTGGGGATTCTAATTACATTCAGAGTGTTGTTCTCTCTCTGATTGAATCCATAAGGATGGAGAAGAAGCACATTTTGATGGACGTGCTAAAACTAGCTGATACGTATGGCTTGAGTCGCAGTGAGGTGCTCCTAAGATATCTCAGTTCTATTCTTGTTTCTGACGTGTGGACCAATGATGATATTTCAGTTGAAATCTTAGAATTCAGAGGCGAAATGATTGGTTATGCTGCAGAAAGCATTAAATCTATTTCCATAATTGTATATCCAGCAGTTGACGGGTTCAACAAGTTGCGTCTAGCATACATATATGGCCTTCTCTCTGACTTCTACTTGCAGCTGGAAGAAACAGGAGAATCACTACAACTGGTAGCCCCAGATCAAGCCGTTATATCTAGCTTAGGTTTAGCACGTTACTATAAGATCATCGAGCAAGAATGTAAAAGAGTTTCATTCATCAAGAGTCTAAACTTTAAAAACATTGCTGAGTTAGGTGGTCTGAACATTCAGTGCTTTAGCAGTGAAGTCTACACACATGTAGGTGAAGAGAATTTGGAAGCTTTGGCAAAAATGGTGGAAACGCTTTCCAGTATCTATCCTGATCCTGTTCCAGAAGGTCTCATATCCTCACAAGATCTCTATAAATATTATGTTCTTAATTTGTTGATGACTTTGGAGACTAATGTTGGTACTAATTCTAAAAGTAAAAGCCCTGAAAACCTTCAAGTTTTGGTAAGCCAACTTGAGCAGAGCTTTGACCTTTGTAGAACGTATGTCGGACTGCTGGCTCATTCGGATGCACTGGACATCATGAAGCGGCACCTTACAGTAATCTTACCTCTTCATGCCTCTTTTGGGGACCTTCCTGATAACTCGACATGGCAGGAATGTTTCATCACGCTTCTAAACTTCTGGATTAGAGTAGCTGATGAAATGATGGAGATAGTACCACATGGGAGTAAAGGAGAAAAATTACATTTCAGTCCAGAATGTTTACTGAGTTGTCTCAAGGTATTTCATAGGTTGGTAGTAGAAGATAGTGTCTCTCCAAGTCAGGGCTGGAGCACCATTATGAACTACGCCAAAAATGGTTTAATCGGTGATCCTGTTTTTGAAGCTCTAATTTTCAGCAGAGCTATGATTTTCTCTGGTTGTGGATTTGGAGCTATTACGGACGTATTTTCTGAGGTGGTATCACAGTATTCAGCTGATACAACTTCAAAAAGTGACATATCAATTCAGGATCTTCCCCATCTCTATGTGAAAATTTTGGAGCTCATTCTACAAAATTTGGTCAGTTGCTCAGATGAGCACCAAAACTTGCATTACCTTTTGATTTCCCTGAGTAAGTTAGAAGGTAGTTTAGAGGATTTGGAGAGGGTCAGGCGGGTAGTTTGGGCAAGAATGGCTGAATTCTCTGATGATTTGCAGATACCAAGTTCTGTCCGGGTTTATGTACTTGAGCTTATGCAATTTATCACGGGTAGAAGTATCAAGGGTTTTTCTGGTGAGATACAATATAGCGTCCCACCATGGGAAGGGTGGGAGGAGTTCCAATATGGAGCTAAAGAGGGAGAAAATGTTTCTGTTCCAGGGAGATCTGATCACAAAGATACTTCTAGCAGGTTTACAAGTACATTAGTTGCCCTAAAATCAACTCGACTTGCAGGAACAATCTCAGCCAGTATAGAAGTTACATCTGATGATCTCTCAACAGTCGAGACTGCAGTTACTTGTTTCTTGAAATTATGTGGAGCTGCAACTAAAGATTCACATTTTGATACTTTATTAGCCATTTTAGCCGAATGGGAAGGGTATTTTTTGGTTGAGAAAAATGAAGAAGCCTCTACAGAAGAAACTGACCAGGGAAATGACTGGAACAATGACAGTTGGGATGAGGGATGGGAAAGCTTTCAGGAAGTTGAAAAGAAGGATGAAAAGACAGAGGTCCCTATTTCAGTTAACCCTCTACACTTGTGTTGGATGGAAATCTTCCAAAAACTGATCAGTTTTTCGCGGTTTAGAGACCTGGTAAGATTGATTGACCAATCCTTACCAAAACCCAATGGAACTTTGCTTGATGAAGACAATGCCAGAAGCTTAAGCCAAAGTTTGATCGAAACAGATTGCTTTGTGGCTTCAAAGGTGGCAATGTTACTGCCCTACGAGGCAATCAAATTGCAGTGTCTGGATGCAGTTGAAGAAAAGTTGAAAAAAGACGGCTTCTCAGAAGCAATTAGCAAAGACCTAGAGTTTTTATTACTTGCATTATCCTCTGGAGTCTTCTCGATCATTGCATCCAAATCATCTTATGGAACCATTTTCTCTCATCTCTGTTACTTGGTTGGGAAGTTCTCACACCGATGTCAAGAAGTCCAGTTATCAAACCTCACTCGAAGAGAAACGGACAGACATGAAAACATTGGTAGAGGCTTTTTATATATTTTCAGAAAGGTCACCTTCCCCTGTTTTATATCAAAGCTTGTTAAGGCAGACCAGCAGGTTCTTGCAGCACTTGTTCTTACAAAATTCATGCACACAAATCCTTCATTGTGTCTTGTCAATATTGCTGATGCTAGTCTTCGCCGATTTTTGGAGAAAGAGCTTCACACTGTACAAAATGATGAGTCGGGTCCCGGGGACATGTGTTTGGATGATGATATACTAAGGAATACGGTTTTGAACTTGAAAGGGAAGTTGGGAAATCTAATCCAAGCTGCACTATCGCTTCTCTCAAGAAGTTAG 7236 40.66 MEESVRKVLYETRRHASRPYVPSYPPQQANQRGSRNILSLFPIRAINQLKEKWSGYNQPRNTKKLISLFVSPRGERVAVAAGNQITILQEEDDYQNPCGIFTNNNLATFKVGTWSESHDVLGVVDDTDTLYFVKVNGEEITRITRKHLKVSLPIIGLIAQEDFDSQKNFMCSFSIFTSNGYLQHLEISREPNISISSACASDSGLNPKGQFPNVVFCIDYYTDLSLLAIAGSSGSCYLSLWRKSGILDFKQLVSLHFDGSYSLPRGDSAQVSYPKLRISQQAQFIGTLDVTGRLYIFKVDEEHFTVSLFSPNERFDSQVSNNILNGGKYFVEDVLDFTWWTSHIITIAKRSGVITMLDILSGKKVLGDGPAYSMPVLESVQKSQGHLFLLESTTSEVCSPPKDGVPDDFQHTDQIRGEMFSQYDMSKLQWSLISFSERSVAEMYNVLITNGKYKDALDFADCYGLDKDKALKSQWLQSGHGLKEIDTLLSDIKDEAFVLSECVDKAGPTEDAVKALLAYGLRLTNQYLFTKAEEESSQIWNFRLARLRLLQFKDRLETFLGINMGRFSVQEYSKFRVMPINETAVTLAQSGKIGALNLLFKRHPYSLNPFMLEILAAIPETVPIQTYSQLLPGRSPPDIVVVREADWVECEKMVNFINRLPDNYEIDIQIRTEPIIKQSVGLFWPSINELTVWFSNRARDIDTLSGQLDNCLCLLDFANRKGIFELKQFHDDISCFHQLIYSDDGNNNISVNLITWEELSPYDKFKMMLNGVKEENVVRRLLDTAIPFMHKRLHGIPLSPQNQGTDTNIWAGDDRDESFLVRWMKEIAMQNKLDMCLIVIEEGCRDIENNGFFTNEFEAVESALQCIYLCTLTDKWNIMAGILSKLPQMQDTEPVEDLERRLRLVEGHIEAGRLLSFYQVPKPINFFLEVHSDEKGVKQILRLILSKYIRQQPGRSDNDWANMWRDMQCLREKAFPFLDLEYMLIEFCRGLLKAGRFSLARNYLKGTGSVPLAAAKAEKLVIQAAREYFFSASSLSCAEIWKAKECLDLFPSSRNVKAEVDIIDALTVRLPRLGVTLLPMQFRQIKDPMEIIKMAISSNTGAYLHVDELIEVAKFLGMNTLDDVSTIEEAIAREAAVAGDLQLAFDLCLVLSKKGHGPVWDLCAAIARGPALENMDINSRKQLLGFALSHCDEESISELLNAWKDFDMLGQCETLVMLTGTSPPNFLVQNSSTLFPVHNTQNVGDSTTSFGLVEGIIGEDREVHLDKIKERIYAVAKISPIENKNNLESFLLENGKILSFAALQLPWLVELSTKEDGGKKLFPGMIPGKQYVSLKTQVIVTILSWLARNGFVPTDNLISSLAKSVVAPPVTKEEDLLGCAFLLNLVDAFNGVEVIEEQLGARENYREISSIMNVGMTYSLLHNSSVECGSASRRRELLLQKFKEKHTSSTSEDKEKGKVQSTFWREWKLKLEEQRRAADRSRTLENIIPGVETARFLSGDSNYIQSVVLSLIESIRMEKKHILMDVLKLADTYGLSRSEVLLRYLSSILVSDVWTNDDISVEILEFRGEMIGYAAESIKSISIIVYPAVDGFNKLRLAYIYGLLSDFYLQLEETGESLQLVAPDQAVISSLGLARYYKIIEQECKRVSFIKSLNFKNIAELGGLNIQCFSSEVYTHVGEENLEALAKMVETLSSIYPDPVPEGLISSQDLYKYYVLNLLMTLETNVGTNSKSKSPENLQVLVSQLEQSFDLCRTYVGLLAHSDALDIMKRHLTVILPLHASFGDLPDNSTWQECFITLLNFWIRVADEMMEIVPHGSKGEKLHFSPECLLSCLKVFHRLVVEDSVSPSQGWSTIMNYAKNGLIGDPVFEALIFSRAMIFSGCGFGAITDVFSEVVSQYSADTTSKSDISIQDLPHLYVKILELILQNLVSCSDEHQNLHYLLISLSKLEGSLEDLERVRRVVWARMAEFSDDLQIPSSVRVYVLELMQFITGRSIKGFSGEIQYSVPPWEGWEEFQYGAKEGENVSVPGRSDHKDTSSRFTSTLVALKSTRLAGTISASIEVTSDDLSTVETAVTCFLKLCGAATKDSHFDTLLAILAEWEGYFLVEKNEEASTEETDQGNDWNNDSWDEGWESFQEVEKKDEKTEVPISVNPLHLCWMEIFQKLISFSRFRDLVRLIDQSLPKPNGTLLDEDNARSLSQSLIETDCFVASKVAMLLPYEAIKLQCLDAVEEKLKKDGFSEAISKDLEFLLLALSSGVFSIIASKSSYGTIFSHLCYLVGKFSHRCQEVQLSNLTRRETDRHENIGRGFLYIFRKVTFPCFISKLVKADQQVLAALVLTKFMHTNPSLCLVNIADASLRRFLEKELHTVQNDESGPGDMCLDDDILRNTVLNLKGKLGNLIQAALSLLSRS 2411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3055862 3066673 + Conep05aG0073700.1 Cone5ag0712 437730

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0712 2411 PANTHER NEUROBLASTOMA-AMPLIFIED SEQUENCE 7 2407 - GO:0000149(PANTHER)|GO:0006890(PANTHER)|GO:0070939(PANTHER)
Cone5ag0712 2411 Pfam Secretory pathway protein Sec39 903 1148 IPR013244 GO:0006890(InterPro)
Cone5ag0712 2411 Pfam Secretory pathway protein Sec39 584 900 IPR013244 GO:0006890(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0712 K20473 - - mdm:103439915 3013.79
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1004 Cone-Chr1:55049073 Cone5ag0712 Cone-Chr5:3055862 2.99E-264 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1000 . . Bda05g00133 . . . Bma10g01310 . . . . . . . . . . . . . . . . . . . . . . . . Cone1ag1004 Cone5ag0712 . . . . . . Blo07g00325 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010152 1 1 1 1 0 1 1 1 1 1 1 1 1 0 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 31