Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0713 ATGGAGCTTTTCTACTACCTGGTTTTTGGGGGAATGGGAGCGTTGGTGGCCGCATTGGAGCTGAGCAAGAGCACAAAGAATGGAGTCTCCACGTCCTCGACCTTCAATGCGTTCAAGAACAATTACATTCTCGTCTACTCGCTTATGATGGCCGGAGATTGGTTGCAGGGCCCCTATGTCTACTACCTTTACACTACGTATGGCTTTGGGAAAGGGGAGATTGGCCAGCTTTTTATTGCTGGTTTTGGCTCCTCTATGTTGTTTGGGACTATTGTTGGATCTCTTGCTGACAAACAGGGGCGTAAGAGAGCTTGTGTGACTTATTGTATAACTTACATATTGAGTTGTATCACCAAACATTCACCTCAGTACAAGGTTTTGATGGTGGGCCGTGTTTTGGGAGGTATCGCCACTTCCCTCCTCTTTTCTTCATTCGAGTCATGGCTTGTTGCAGAGCATAACAAGAGGGGCTTTGAACAACAATGGCTCTCAATAACTTTCTCAAAGGCAATTTTTTTTGGCAATGGTCTTGTTGCCATCGTGGCTGGATTGTTGGGAAATCTACTAGTAGATACCCTAGCTCTTGGGCCAGTGGCTCCATTTGATGCTGCTTCATGCTTTCTTGCAATTGGTATGGCCATCATCTTATCATCGTGGTCTGAGAACTATGGAGACCCTTCTGAGAGCAAGGATTTACTCACACAATTCAAGACTGCTGCTGTGGCCATTGCTTCCGATGAGAGAATTGCACTCCTGGGTGCTATCCAGTCTCTGTTTGAAGGTTCGATGTATACCTTTGTGTTCCTCTGGACTCCTGCTCTGAGCCCAAATGAAGAGGTCATTCCTCATGGTTTTATCTTCGCCACATTCATGTTGTCCTCAATGTTGGGAAGCTCCCTTGCATCTCGGTTATTGTCCCGCTCATCTCCAAGAGTTGAAAGCTATATGCAGATTGTTTTTGTCGTCTCATCAGCCGCTCTTGTACTTCCAGTTGTTACCTACTTCTTGGTACCTCCGTCACAAGTGAAAGGTGGTAGCATCACATTTGCAGGTTGTATTCAGCTTCTTGGCTTCTGTGCCTTTGAAGCATGTGTGGGTATATTCTGGCCTTCAATTATGAAGATGAGGTCCCAATACATTCCCGAGGAGGCTAGGAGCACCATTATGAACTTCTTCCGCATTCCTCTCAATATTTTTGTGTGCATCGTCTTATACAATGTCAATGCATTCCCCATGGCTGTCATGTTTGGTATGTGCTCATCTTTTCTCCTTCTGGCATGCATTCTACAGCGCCAGCTAATGTTTATGGCAGACAAGCCAAAGACAGAAGACTGGGCCCCTCTGAGGGAAAGAACCGAGGAAGAGCCATTAGATGCCTAA 1380 46.01 MELFYYLVFGGMGALVAALELSKSTKNGVSTSSTFNAFKNNYILVYSLMMAGDWLQGPYVYYLYTTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCITKHSPQYKVLMVGRVLGGIATSLLFSSFESWLVAEHNKRGFEQQWLSITFSKAIFFGNGLVAIVAGLLGNLLVDTLALGPVAPFDAASCFLAIGMAIILSSWSENYGDPSESKDLLTQFKTAAVAIASDERIALLGAIQSLFEGSMYTFVFLWTPALSPNEEVIPHGFIFATFMLSSMLGSSLASRLLSRSSPRVESYMQIVFVVSSAALVLPVVTYFLVPPSQVKGGSITFAGCIQLLGFCAFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLNIFVCIVLYNVNAFPMAVMFGMCSSFLLLACILQRQLMFMADKPKTEDWAPLRERTEEEPLDA 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3068565 3072016 - Conep05aG0073800.1 Cone5ag0713 437731

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0713 459 CDD MFS_MFSD5_like 35 431 - -
Cone5ag0713 459 SUPERFAMILY MFS general substrate transporter 43 431 IPR036259 -
Cone5ag0713 459 Pfam Sugar-tranasporters, 12 TM 4 358 IPR008509 GO:0015098(InterPro)|GO:0015689(InterPro)|GO:0016020(InterPro)
Cone5ag0713 459 Gene3D MFS general substrate transporter like domains 42 432 IPR036259 -
Cone5ag0713 459 PANTHER SAM (S-ADENOSYL METHIONINE) TRANSPORTER 1 441 IPR008509 GO:0015098(InterPro)|GO:0015689(InterPro)|GO:0016020(PANTHER)|GO:0016020(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0713 K24175 - - ath:AT4G27720 772.311
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1005 Cone-Chr1:55052672 Cone5ag0713 Cone-Chr5:3068565 4.08e-318 wgd
Cone14ag0001 Cone-Chr14:16371 Cone5ag0713 Cone-Chr5:3068565 1.25E-230 wgd
Cone15ag0002 Cone-Chr15:27113 Cone5ag0713 Cone-Chr5:3068565 1.53E-35 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g998 Blo06g01055 Blo15g00079 . Bda07g01948 . Bpe07g01025 . Bma14g02020 . . . Cma15g01012 Car02g00941 Car15g00946 . Cpe05g00586 . . . . . . . . Cla01g00026 Cam01g0025 Cec01g0023 Cco01g0026 Clacu01g0026 Cmu01g0025 Cre09g2482 Cone1ag1005 Cone5ag0713 Cone14ag0001 Cone15ag0002 . . . . . Blo09g00012 Bda06g00794 Bda15g00793 . Bpe12g00341 . Bma12g01220 . Cmo02g01168 . . . . . . Cpe13g00324 Bhi12g00679 . . . Hepe06g0814 . . . . . . . . . Lsi09g00006 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001828 3 2 3 2 2 2 3 2 2 2 2 2 2 2 2 2 2 3 3 2 2 2 2 2 2 2 2 3 3 2 67