Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0716 ATGGGATCAGATCCAAAGGTTCATGTATTTGAGGAAGTGGAGAAGCACAACAAGATCAAAGATTGTTGGCTTGTTATTTCTGGGAAGCTTGTAGAGTCCAATTTGGTCCTACCAGAACTCCATTTATTCGCCATACCAAACCTAACTGAAGAGCTCCGGAGTCCAGTCTACATAAACTGCGCCCAAAAGGTATACGATGTAACACCATTCATGGATGATCATCCTGGAGGCGATGAAGTATTGGTAGCAGCAACCGGAAAAGACGCGACAAGTGATTTTGATGATGTGGGGCACAGTGATGCTGCCAGAGATATGATGGAAAAATATTACATTGGAGAAATCGATCCTGCTACTGTTCCAATGAAACGGCCAAAGGGTCCCCCACAACAAGCCATTTACAATCCGGACAAGACACCTGAGTTTGTGATCAAGCTTTTACAGTTTGTGGTTCCCCTCTTGATCTTGGGTTTAGCATTTACCGTCCGTCACTACACGAATACTGAGGCCAAAACCGAGTAG 519 44.7 MGSDPKVHVFEEVEKHNKIKDCWLVISGKLVESNLVLPELHLFAIPNLTEELRSPVYINCAQKVYDVTPFMDDHPGGDEVLVAATGKDATSDFDDVGHSDAARDMMEKYYIGEIDPATVPMKRPKGPPQQAIYNPDKTPEFVIKLLQFVVPLLILGLAFTVRHYTNTEAKTE 172
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3082824 3084675 + Conep05aG0074100.1 Cone5ag0716 437734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0716 172 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 70 77 IPR018506 GO:0020037(InterPro)
Cone5ag0716 172 Pfam Cytochrome b5-like Heme/Steroid binding domain 54 114 IPR001199 -
Cone5ag0716 172 Gene3D - 2 119 IPR036400 -
Cone5ag0716 172 PRINTS Cytochrome B5 signature 89 96 IPR001199 -
Cone5ag0716 172 PRINTS Cytochrome B5 signature 74 88 IPR001199 -
Cone5ag0716 172 PRINTS Cytochrome B5 signature 64 74 IPR001199 -
Cone5ag0716 172 PRINTS Cytochrome B5 signature 102 114 IPR001199 -
Cone5ag0716 172 SMART Cyt_b5_2 10 115 IPR001199 -
Cone5ag0716 172 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 55 125 IPR036400 -
Cone5ag0716 172 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 115 IPR001199 -
Cone5ag0716 172 PANTHER CYTOCHROME B5 5 165 IPR050668 GO:0016020(PANTHER)|GO:0020037(PANTHER)|GO:0043231(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0397 Cone-Chr4:1806930 Cone5ag0716 Cone-Chr5:3082824 4.20E-44 dispersed
Cone5ag0716 Cone-Chr5:3082824 Cone7ag0386 Cone-Chr7:1704037 4.71E-45 dispersed
Cone1ag1008 Cone-Chr1:55070293 Cone5ag0716 Cone-Chr5:3082824 5.86E-90 wgd
Cone14ag0449 Cone-Chr14:2102538 Cone5ag0716 Cone-Chr5:3082824 9.62E-38 wgd
Cone15ag0479 Cone-Chr15:2260879 Cone5ag0716 Cone-Chr5:3082824 3.28E-33 wgd
Cone18ag0994 Cone-Chr18:7305465 Cone5ag0716 Cone-Chr5:3082824 1.52E-29 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0716 K23490 - mdm:103444212 216.083