Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0716 ATGGGATCAGATCCAAAGGTTCATGTATTTGAGGAAGTGGAGAAGCACAACAAGATCAAAGATTGTTGGCTTGTTATTTCTGGGAAGCTTGTAGAGTCCAATTTGGTCCTACCAGAACTCCATTTATTCGCCATACCAAACCTAACTGAAGAGCTCCGGAGTCCAGTCTACATAAACTGCGCCCAAAAGGTATACGATGTAACACCATTCATGGATGATCATCCTGGAGGCGATGAAGTATTGGTAGCAGCAACCGGAAAAGACGCGACAAGTGATTTTGATGATGTGGGGCACAGTGATGCTGCCAGAGATATGATGGAAAAATATTACATTGGAGAAATCGATCCTGCTACTGTTCCAATGAAACGGCCAAAGGGTCCCCCACAACAAGCCATTTACAATCCGGACAAGACACCTGAGTTTGTGATCAAGCTTTTACAGTTTGTGGTTCCCCTCTTGATCTTGGGTTTAGCATTTACCGTCCGTCACTACACGAATACTGAGGCCAAAACCGAGTAG 519 44.7 MGSDPKVHVFEEVEKHNKIKDCWLVISGKLVESNLVLPELHLFAIPNLTEELRSPVYINCAQKVYDVTPFMDDHPGGDEVLVAATGKDATSDFDDVGHSDAARDMMEKYYIGEIDPATVPMKRPKGPPQQAIYNPDKTPEFVIKLLQFVVPLLILGLAFTVRHYTNTEAKTE 172
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3082824 3084675 + Conep05aG0074100.1 Cone5ag0716 437734

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0716 172 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 70 77 IPR018506 GO:0020037(InterPro)
Cone5ag0716 172 Pfam Cytochrome b5-like Heme/Steroid binding domain 54 114 IPR001199 -
Cone5ag0716 172 Gene3D - 2 119 IPR036400 -
Cone5ag0716 172 PRINTS Cytochrome B5 signature 89 96 IPR001199 -
Cone5ag0716 172 PRINTS Cytochrome B5 signature 74 88 IPR001199 -
Cone5ag0716 172 PRINTS Cytochrome B5 signature 64 74 IPR001199 -
Cone5ag0716 172 PRINTS Cytochrome B5 signature 102 114 IPR001199 -
Cone5ag0716 172 SMART Cyt_b5_2 10 115 IPR001199 -
Cone5ag0716 172 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 55 125 IPR036400 -
Cone5ag0716 172 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 115 IPR001199 -
Cone5ag0716 172 PANTHER CYTOCHROME B5 5 165 IPR050668 GO:0016020(PANTHER)|GO:0020037(PANTHER)|GO:0043231(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0716 K23490 - - mdm:103444212 216.083
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0397 Cone-Chr4:1806930 Cone5ag0716 Cone-Chr5:3082824 4.20E-44 dispersed
Cone5ag0716 Cone-Chr5:3082824 Cone7ag0386 Cone-Chr7:1704037 4.71E-45 dispersed
Cone1ag1008 Cone-Chr1:55070293 Cone5ag0716 Cone-Chr5:3082824 5.86E-90 wgd
Cone14ag0449 Cone-Chr14:2102538 Cone5ag0716 Cone-Chr5:3082824 9.62E-38 wgd
Cone15ag0479 Cone-Chr15:2260879 Cone5ag0716 Cone-Chr5:3082824 3.28E-33 wgd
Cone18ag0994 Cone-Chr18:7305465 Cone5ag0716 Cone-Chr5:3082824 1.52E-29 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g991 . . . Bda07g01952 . . . Bma14g02023 . . Cma02g01139 Cma15g01010 Car02g00943 Car15g00942 . Cpe05g00584 . . . . . . . . Cla01g00023 Cam01g0022 Cec01g0020 Cco01g0024 Clacu01g0023 Cmu01g0022 Cre09g2485 Cone1ag1008 Cone5ag0716 . . . Csa05g00025 Chy09g01458 . . Blo09g00007 . . . . . . . Cmo02g01170 Cmo15g01073 . . . . . Cpe13g00327 Bhi12g00682 . . . Hepe06g0817 . . . . . . . . . Lsi09g00003 . . Cme09g02007
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone1ag1008 . 1 134 NADPH P450 reductases AT5G53560 73.1 1.1e-54 209.9
Cone5ag0716 . 1 168 NADPH P450 reductases AT5G53560 58.3 2.4e-49 192.2
Cone7ag0386 . 1 133 NADPH P450 reductases AT5G53560 64.7 1.1e-46 183.3
Cone4ag0397 . 1 133 NADPH P450 reductases AT5G53560 64.7 1.9e-46 182.6
Cone14ag0449 . 1 133 NADPH P450 reductases AT5G53560 56.7 1.4e-41 166.4
Cone15ag0479 . 1 133 NADPH P450 reductases AT5G53560 52.2 1.6e-37 152.9
Cone4ag0397 . 1 133 NADPH P450 reductases AT5G48810 65.2 7.4e-49 190.7
Cone7ag0386 . 1 133 NADPH P450 reductases AT5G48810 65.2 1.3e-48 189.9
Cone1ag1008 . 1 135 NADPH P450 reductases AT5G48810 62.0 5.0e-45 177.9
Cone18ag0994 . 1 135 NADPH P450 reductases AT5G48810 55.9 6.3e-40 161.0
Cone14ag0449 . 1 133 NADPH P450 reductases AT5G48810 53.7 2.4e-39 159.1
Cone7ag0386 . 22 133 NADPH P450 reductases AT2G32720 80.4 1.6e-48 189.5
Cone4ag0397 . 22 133 NADPH P450 reductases AT2G32720 79.5 4.6e-48 188.0
Cone1ag1008 . 22 133 NADPH P450 reductases AT2G32720 63.4 2.8e-37 152.1
Cone4ag0958 . 1 117 NADPH P450 reductases AT1G60660 60.0 4.3e-37 151.4
Cone9ag0531 . 1 130 NADPH P450 reductases AT1G26340 59.7 5.5e-41 164.5
Cone3ag0519 . 2 281 NADPH P450 reductases AT5G17770 80.4 9.1e-131 463.8
Cone10ag0494 . 3 281 NADPH P450 reductases AT5G17770 81.0 2.2e-129 459.1
Cone5ag1478 . 8 278 NADPH P450 reductases AT5G17770 76.4 8.2e-124 440.7
Cone1ag0382 . 8 278 NADPH P450 reductases AT5G17770 77.1 5.3e-123 438.0
Cone1ag1008 . 1 134 NADPH P450 reductases AT5G53560 73.1 1.1e-54 209.9
Cone5ag0716 . 1 168 NADPH P450 reductases AT5G53560 58.3 2.4e-49 192.2
Cone7ag0386 . 1 133 NADPH P450 reductases AT5G53560 64.7 1.1e-46 183.3
Cone4ag0397 . 1 133 NADPH P450 reductases AT5G53560 64.7 1.9e-46 182.6
Cone14ag0449 . 1 133 NADPH P450 reductases AT5G53560 56.7 1.4e-41 166.4
Cone15ag0479 . 1 133 NADPH P450 reductases AT5G53560 52.2 1.6e-37 152.9
Cone4ag0397 . 1 133 NADPH P450 reductases AT5G48810 65.2 7.4e-49 190.7
Cone7ag0386 . 1 133 NADPH P450 reductases AT5G48810 65.2 1.3e-48 189.9
Cone1ag1008 . 1 135 NADPH P450 reductases AT5G48810 62.0 5.0e-45 177.9
Cone18ag0994 . 1 135 NADPH P450 reductases AT5G48810 55.9 6.3e-40 161.0
Cone14ag0449 . 1 133 NADPH P450 reductases AT5G48810 53.7 2.4e-39 159.1
Cone7ag0386 . 22 133 NADPH P450 reductases AT2G32720 80.4 1.6e-48 189.5
Cone4ag0397 . 22 133 NADPH P450 reductases AT2G32720 79.5 4.6e-48 188.0
Cone1ag1008 . 22 133 NADPH P450 reductases AT2G32720 63.4 2.8e-37 152.1
Cone4ag0958 . 1 117 NADPH P450 reductases AT1G60660 60.0 4.3e-37 151.4
Cone9ag0531 . 1 130 NADPH P450 reductases AT1G26340 59.7 5.5e-41 164.5
Cone3ag0519 . 2 281 NADPH P450 reductases AT5G17770 80.4 9.1e-131 463.8
Cone10ag0494 . 3 281 NADPH P450 reductases AT5G17770 81.0 2.2e-129 459.1
Cone5ag1478 . 8 278 NADPH P450 reductases AT5G17770 76.4 8.2e-124 440.7
Cone1ag0382 . 8 278 NADPH P450 reductases AT5G17770 77.1 5.3e-123 438.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000252 4 9 3 5 3 5 9 4 4 3 4 4 8 5 5 9 5 6 9 4 5 4 5 5 4 4 4 10 5 2 156