Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0719 ATGGAGAGAAGTGAGCAAATTTCAAATATACCTAAGAAGAAGAAGGGGAAGGGTGGGAAGAACAATAGGAGGTTCAGTGACGAACAGATTCGGTCCCTGGAATCGGTTTTCGAAACGCAGACACAGATCGAGCCGACGAAGAAAGTGGAGGTGGCAAGAGAACTTGGGCTTCAACCTCGCCAGGTTGCTATATGGTTTCAAAACAGAAGAGCAAGATGGAAGTCTAAGCAGATAGAGAAGGACTTCATTGCTCTTAAAGCAAGTTATGATAGTTTAGCCACTAGATTTGAGTCCTTGCAGGAAGAGAAACAATCCTTGCTCATTCAGAGGCTAAGTGAGCTGATAGAAAAGACTCATGATGGGCATAAAGAGAAGGAAGGAGTTATAGAAGGGGAGAACAGTAGACATGGAGGGAGTTCATATAGTAATGAAACAGAGGTGAAGCCAATTACGAGCGGTAGTAGCTTAGAGTTAGATAAGAGGGGAGGAGGAGTGTTGTTCAAGGATCCAGATTATGAGCTTGAATTCGTCAATGATCCACAAGAAGATGATATCATGATGTACACTAATAATGATATCGAAGAGGAAAAAGGGATTCAGACAGTTGTGCGTGAAAGTTCATGTGAAGATGCAAATCATGATAAGAAATGCTACAATTTTAATTCCTTAGGTGGTCTGTTTGATCTGTCGTCGTGTAGTAGTAGCAGCAGCTCGCAGTACTGGTTTAATTTCTGGGCTTGA 741 42.24 MERSEQISNIPKKKKGKGGKNNRRFSDEQIRSLESVFETQTQIEPTKKVEVARELGLQPRQVAIWFQNRRARWKSKQIEKDFIALKASYDSLATRFESLQEEKQSLLIQRLSELIEKTHDGHKEKEGVIEGENSRHGGSSYSNETEVKPITSGSSLELDKRGGGVLFKDPDYELEFVNDPQEDDIMMYTNNDIEEEKGIQTVVRESSCEDANHDKKCYNFNSLGGLFDLSSCSSSSSSQYWFNFWA 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3095360 3096674 - Conep05aG0074400.1 Cone5ag0719 437737

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0719 246 FunFam Homeobox-leucine zipper protein ATHB-7 4 76 - -
Cone5ag0719 246 PRINTS Lambda-repressor HTH signature 56 72 IPR000047 GO:0003677(InterPro)
Cone5ag0719 246 PRINTS Lambda-repressor HTH signature 47 56 IPR000047 GO:0003677(InterPro)
Cone5ag0719 246 CDD homeodomain 23 77 IPR001356 GO:0003677(InterPro)
Cone5ag0719 246 SMART HOX_1 19 80 IPR001356 GO:0003677(InterPro)
Cone5ag0719 246 ProSitePatterns 'Homeobox' domain signature. 51 74 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cone5ag0719 246 SUPERFAMILY Homeodomain-like 13 77 IPR009057 -
Cone5ag0719 246 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 13 171 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Cone5ag0719 246 Gene3D - 11 82 - -
Cone5ag0719 246 Pfam Homeodomain 23 74 IPR001356 GO:0003677(InterPro)
Cone5ag0719 246 Pfam Homeobox associated leucine zipper 76 115 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone5ag0719 246 ProSiteProfiles 'Homeobox' domain profile. 16 76 IPR001356 GO:0003677(InterPro)
Cone5ag0719 246 MobiDBLite consensus disorder prediction 135 149 - -
Cone5ag0719 246 Coils Coil 89 109 - -
Cone5ag0719 246 MobiDBLite consensus disorder prediction 1 25 - -
Cone5ag0719 246 MobiDBLite consensus disorder prediction 120 149 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0719 K09338 - - vvi:100245524 157.918
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag0719 Cone-Chr5:3095360 Cone9ag1462 Cone-Chr9:10830702 3.02E-20 dispersed
Cone1ag1012 Cone-Chr1:55081851 Cone5ag0719 Cone-Chr5:3095360 3.20E-142 wgd
Cone11ag0517 Cone-Chr11:2696954 Cone5ag0719 Cone-Chr5:3095360 2.80E-34 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g986 . . Bda05g00138 Bda07g01954 . . Bma10g01316 Bma14g02025 Cmo16g00028 Cmo18g01371 . . . . . . . . . . . . . . . . . . . . . Cone1ag1012 Cone5ag0719 . . . . . . . . . . . . . . . . . Cma16g00024 Cma18g01338 Car16g00022 Car18g01252 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001722 2 3 1 3 2 2 3 2 2 1 2 2 3 2 2 3 2 3 0 2 2 2 2 2 2 2 2 5 2 3 66
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46146 PF00291 PALP 2.00E-48 CL0063 Cone TF