Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0722 ATGAACAATAATACATCCGATACTTACTATAAAATTGATCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTGGCGGTTCAGTGATAAGAAATCTGCAGCCTTATCACCTCTTCGCTTCTACTACCACCACTAGCCCCTCCGCACCTTTCAATTTCCCAGAAGATCACAAAATGGCAGTTGCAGAGGCAGCAGCAGCATCTAAAGGATATTATGCTGCTCCCTTCACAAATGCACAGTGGGAAGAGCTTGAGAGACAAGCAATGATTTACAAGTACATGGTCGCCTCCATTCCTGTCCCTCCTGATCTTCTCTTTGCTAATCCTTTCCACAATATCAACAACAACAATCCCAGTATTGTCAACCCTTTCGGCGACGGAGGAGGAGTAGGCGGTTGCGGTGGTGGGTTGAAGCTGAGGTTGTCGAACAGTACAGATCCAGAGCCAGGGCGGTGCCGGAGAACAGATGGGAAGAAGTGGAGGTGCTCAAGAGATGCGGCGGCGGGTCACAGGTACTGTGAGCGCCATATGCATAGAGGTCGTCCCCGTTCAAGAAAGCCTGTGGAAATTCATCATAACACTAGAAAAGAGCAAACTCGCCATGTGAACCATGCTCTTCCGTCTTATTCTACTACTATTACTACTACCACATCTGAACTTAACAACAACAGCGACAGCAGAAGTTCTGATCAATGGAAAAATCTGGGGTACAATCAGACTCCTCTGTTTCTCAACAAAACCCCAGTTTTTGACTCGATACCATCCTCTGTTTCATCTCACAAGGAACATAGGAGCTTGGAGTGGTTGATGAGTGGAGAAGCCATAAATGAACCTTTTAACCAGATAAGAAATAGAGACTCCGCTTCATTTCTGAACCAAACTTCAAAGAATTATGTTGATGCATGGTCTAAAACCGCGGCAGATGAACAGAGCTCTGTTTCATTGACTCTTTCAATGGGTGATCATGCCATGGGTCCTCCTATTCATATGGGCTTAAACCTAAGGCCAGTTGAATCAGTAAAAGAACACAATCATCATGATCAACATCACGAAGGTGGGGGTGGTAACAAATCCCTGATATCGAGTTGGGCCAGTCCATCTTCTTGGGTTGTATCTTCCACACCGGGCGGGCCATTGGCTGAGGCCTTAAGACCCAGTTCCACTGCTGCCGGCGGTGATTTGAGTAGCCCGCCTATAACGGCGGTGTCTTCACCGTCTGGGGTTCTTCAGAAAACAGTTGCTTCTGTTTCGGATAGCAGTGGGAGCAGTAGTCCTACTACATGGGCCAGTTCATGTGCTAATAAAACAGAGTGCTCTGTTGCTCTTCAGTGGTTGAATCAGGGAAGTTAA 1359 46.87 MNNNTSDTYYKIDPSPSPSPSPSPSPSPGGSVIRNLQPYHLFASTTTTSPSAPFNFPEDHKMAVAEAAAASKGYYAAPFTNAQWEELERQAMIYKYMVASIPVPPDLLFANPFHNINNNNPSIVNPFGDGGGVGGCGGGLKLRLSNSTDPEPGRCRRTDGKKWRCSRDAAAGHRYCERHMHRGRPRSRKPVEIHHNTRKEQTRHVNHALPSYSTTITTTTSELNNNSDSRSSDQWKNLGYNQTPLFLNKTPVFDSIPSSVSSHKEHRSLEWLMSGEAINEPFNQIRNRDSASFLNQTSKNYVDAWSKTAADEQSSVSLTLSMGDHAMGPPIHMGLNLRPVESVKEHNHHDQHHEGGGGNKSLISSWASPSSWVVSSTPGGPLAEALRPSSTAAGGDLSSPPITAVSSPSGVLQKTVASVSDSSGSSSPTTWASSCANKTECSVALQWLNQGS 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3113204 3114948 + Conep05aG0074700.1 Cone5ag0722 437740

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0722 452 ProSiteProfiles QLQ domain profile. 78 113 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cone5ag0722 452 Pfam WRC 150 192 IPR014977 -
Cone5ag0722 452 MobiDBLite consensus disorder prediction 392 410 - -
Cone5ag0722 452 MobiDBLite consensus disorder prediction 1 31 - -
Cone5ag0722 452 MobiDBLite consensus disorder prediction 343 362 - -
Cone5ag0722 452 PANTHER GROWTH-REGULATING FACTOR 5 70 318 IPR031137 GO:0005634(InterPro)|GO:0006351(InterPro)|GO:0032502(InterPro)
Cone5ag0722 452 SMART QLQ_2 77 113 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cone5ag0722 452 Pfam QLQ 78 110 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cone5ag0722 452 ProSiteProfiles WRC domain profile. 149 193 IPR014977 -
Cone5ag0722 452 MobiDBLite consensus disorder prediction 377 410 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0722 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0182 Cone-Chr12:901990 Cone5ag0722 Cone-Chr5:3113204 5.30E-32 dispersed
Cone5ag0722 Cone-Chr5:3113204 Cone7ag1319 Cone-Chr7:9673572 3.29E-30 dispersed
Cone1ag1015 Cone-Chr1:55095021 Cone5ag0722 Cone-Chr5:3113204 1.58E-208 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g978 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone1ag1015 Cone5ag0722 . . . . . . . . . . . . Bma08g00399 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0020797 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 2 4
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46147 PF00069 Pkinase 5.90E-49 CL0016 Cone TF