Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0723 ATGGGGAAAACAGGAAGAACAAGCTCGTGGTTTACTAGTGTAGTAAAGAGGGCTTTCAAATCACCCACTAAACCAGTAAGAGGGGATGAACAGAAGAACACCTGTGCTACTAGAAGGAGAGAAGAAGAAGAAGAACAGGAACAGCAAGAAGAGGACAAGAAGAGAGGAAAAAGAATTAGGCAGGTGTTCAAGAAGAATCAGGACAGTGTTAGTGATAAGAAGACGCATGAAGTTTGTAAAACAAGAACTATAACCACAGTTGCTAAGATCGAGTTAGAAGCGGAAGAAACAGATGATAATTTTGAAGTAGCGGCGGGGCCCACCACGGCGGCAGCTCCTCAATTAGCGGCCGTGGAAGTAGTTCAAGATCAAGAAGAACACCACTACCACTACTATTACTCGTCTGCAGCTATAGTCATTCAAACCGCTTTCAGAGGATACCTGGCAAGGAGAGCTCTTAAAGCGTTGAAAGGAATAGTAAAGCTACAGGCCATGGTGAGAGGTCACAACGTGAGAAAGAGAGCAGAGATGACTCTCCATTGCATTCAAGCTCTGCTTCGAGTTCAAACCAGAGTCCTTCACCAACGACGGTCCACCAACTCCAGTTCAGAAGAATGCAATAACATCACTCCAGAAACAGTTGATTCCAAACGTGAAAATGCCCTTGCTTCTGCCTTCTCTCGCCAGATATGGAAAGATGGAGGGGAGTGTAGGAAGAATCAACGGGAGAAAATCATTCAGGGAGGAAGATTTTCGTGTGAACCTGACCAAAGATATTCAGACCCCGTCATAAAAACAGTCCATATCGATACATCTCAACCTTATTCTTATGATCCCCATCCATTACATGTTGATCAATCTGCTACCCATTGTGATAATTATACTTCAACCCCATCACCATGTAGAGCAAGGAATCCTCACGTCTGGTCCACTAGCCCTCGTTTCCAAACAGTGAACACGAACAGTCCAAAGCCCAACTACATGGCTGCCACAGCATCGGCCTTGGCCAGGTTCCGGTCCCAGAGTGCACCAAAGCAGAGGCCAATTAGTACAGGTATGGCTCAGGAGGGTAAGACCAGATCGGCCAAGAAGCGGCTTTCATTTCCTGTTGCTGAAGTTCGTTCAAGTTGA 1131 45.89 MGKTGRTSSWFTSVVKRAFKSPTKPVRGDEQKNTCATRRREEEEEQEQQEEDKKRGKRIRQVFKKNQDSVSDKKTHEVCKTRTITTVAKIELEAEETDDNFEVAAGPTTAAAPQLAAVEVVQDQEEHHYHYYYSSAAIVIQTAFRGYLARRALKALKGIVKLQAMVRGHNVRKRAEMTLHCIQALLRVQTRVLHQRRSTNSSSEECNNITPETVDSKRENALASAFSRQIWKDGGECRKNQREKIIQGGRFSCEPDQRYSDPVIKTVHIDTSQPYSYDPHPLHVDQSATHCDNYTSTPSPCRARNPHVWSTSPRFQTVNTNSPKPNYMAATASALARFRSQSAPKQRPISTGMAQEGKTRSAKKRLSFPVAEVRSS 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3115307 3116977 - Conep05aG0074800.1 Cone5ag0723 437741

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0723 376 Gene3D - 132 180 - -
Cone5ag0723 376 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 125 175 IPR027417 -
Cone5ag0723 376 SMART iq_5 155 176 IPR000048 GO:0005515(InterPro)
Cone5ag0723 376 SMART iq_5 132 154 IPR000048 GO:0005515(InterPro)
Cone5ag0723 376 Coils Coil 33 60 - -
Cone5ag0723 376 MobiDBLite consensus disorder prediction 1 16 - -
Cone5ag0723 376 MobiDBLite consensus disorder prediction 1 71 - -
Cone5ag0723 376 Pfam IQ calmodulin-binding motif 135 154 IPR000048 GO:0005515(InterPro)
Cone5ag0723 376 Pfam IQ calmodulin-binding motif 157 174 IPR000048 GO:0005515(InterPro)
Cone5ag0723 376 PANTHER IQ-DOMAIN 5-RELATED 9 350 - -
Cone5ag0723 376 Pfam Protein of unknown function (DUF4005) 304 372 IPR025064 -
Cone5ag0723 376 MobiDBLite consensus disorder prediction 338 376 - -
Cone5ag0723 376 ProSiteProfiles IQ motif profile. 133 161 - -
Cone5ag0723 376 MobiDBLite consensus disorder prediction 22 71 - -
Cone5ag0723 376 MobiDBLite consensus disorder prediction 338 357 - -
Cone5ag0723 376 ProSiteProfiles IQ motif profile. 157 184 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0723 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0091 Cone-Chr20:415824 Cone5ag0723 Cone-Chr5:3115307 7.33E-10 dispersed
Cone5ag0691 Cone-Chr5:2957586 Cone5ag0723 Cone-Chr5:3115307 2.48E-13 dispersed
Cone5ag0723 Cone-Chr5:3115307 Cone6ag0754 Cone-Chr6:3835983 1.06E-10 dispersed
Cone11ag0521 Cone-Chr11:2740499 Cone5ag0723 Cone-Chr5:3115307 3.93E-26 wgd
Cone18ag0985 Cone-Chr18:7248465 Cone5ag0723 Cone-Chr5:3115307 3.52E-25 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g977 . . . Bda07g01956 Bpe03g00205 . . Bma14g02027 . . . . . . . . . . . . . . . . . . . . . . . . Cone5ag0723 . . . . . . . Blo09g00004 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002938 1 3 2 3 3 1 2 1 1 1 1 1 2 2 2 2 1 3 2 2 2 2 2 2 2 1 1 1 2 3 54