Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0724 ATGATCATGAACGGTGCAAAAAATGAAACCCAGTTCAACGAGTCAACAACATATTCTAAGATCTTTGTCGGAGGATTAGCCTGGAAAACTGATACGGACAGCTTAAAGACTTATTTCCAGCAGTTTGGAGAGATTCTAGAAGCTGCAGTGATCGTCGATAAAAGATCAGGGAGATCAAAGGGCTATGGTTTTGTAACGTTCAAGGATTCGGATTCAGCAATGAAAGCTTGTCAGAATCCATGTCCTGTAATCGATGGAAGGAGAGCAAATTGTAATATTGCTGCTCTCGGTGCACAACAACGATCACCTACTACTCCTCATCAACAATATGGAAATGAGAAGCTGATCAGACCAGTAATCAGAGGCTTGTTACCATCTCCATTTTACAGTACTACTGCCTCTTCATATAATTACTATCAACCCCAGTATCCATATCCGGGTTTTCTGCCTTACGGATTCCCAAGTACTAATCCTCAACACAATTTTTCAATGAACTATTACAATGCATATGCCGCGCAAGTACCGTATTCTCCGGGCTACACCATCGTTATGTCTCGATCTCCGGGAATGTACTCCAAATTACTTCAATACCCTTACATGCATTACCAGAACCTCAAACATGGGAGCTTACCATTCCCCCCTTCACCTTCAACCTCAATGACTGTCTCCGGTTGA 675 42.37 MIMNGAKNETQFNESTTYSKIFVGGLAWKTDTDSLKTYFQQFGEILEAAVIVDKRSGRSKGYGFVTFKDSDSAMKACQNPCPVIDGRRANCNIAALGAQQRSPTTPHQQYGNEKLIRPVIRGLLPSPFYSTTASSYNYYQPQYPYPGFLPYGFPSTNPQHNFSMNYYNAYAAQVPYSPGYTIVMSRSPGMYSKLLQYPYMHYQNLKHGSLPFPPSPSTSMTVSG 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3118506 3119516 + Conep05aG0074900.1 Cone5ag0724 437742

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0724 224 SMART rrm1_1 20 92 IPR000504 GO:0003723(InterPro)
Cone5ag0724 224 Pfam RNA recognition motif 21 78 IPR000504 GO:0003723(InterPro)
Cone5ag0724 224 Gene3D - 3 111 IPR012677 -
Cone5ag0724 224 SUPERFAMILY RNA-binding domain, RBD 16 95 IPR035979 GO:0003676(InterPro)
Cone5ag0724 224 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 19 96 IPR000504 GO:0003723(InterPro)
Cone5ag0724 224 PANTHER BOULE-RELATED 11 216 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0724 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag0724 Cone-Chr5:3118506 Cone7ag0080 Cone-Chr7:353406 8.57E-44 dispersed
Cone1ag1016 Cone-Chr1:55098182 Cone5ag0724 Cone-Chr5:3118506 1.63E-54 wgd
Cone14ag0461 Cone-Chr14:2217951 Cone5ag0724 Cone-Chr5:3118506 3.73E-44 wgd
Cone15ag0494 Cone-Chr15:2386002 Cone5ag0724 Cone-Chr5:3118506 1.26E-44 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g975 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone5ag0724 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0029717 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 2