Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0725 ATGGCGGTGGCGGAGAATGATGGGGTCAAAATCGGATCATCGAGTCAAAGTTTGGACGATTCCGTCGTTTCACCTCAGTCGAATCCACCTGACGAGCCTGAAAAGCAAAAACCCAGATACGATTCTTCCATTTCCAGTGTAGAGCCCGATTCTCAGTCAAACGGAGTTGATGATCGGAAAAATCCCCTGCAAGAGAAAACCGCAGCTAGCGGGCCCACTGGAAATTACGAGGCTCATCAGATGGGTGAGATTCAAAATGGGTTTGAAGCAAATGGAGTCAAAGTAGTCTCTAATGGCGGAGGAGGAGGAGGAGGGTATAGAGGCATTAATCAGAGGTCTTCTAATATTCATGACAGTAATGGGGTGGTTGATCATGACGGGGAAGAAAGCTTCAAGAGGGACATGAGAGATTTGGCTGAGCTCTTGTCTAACTTGAATCCCATGGCAGAGGAATTTATTCCTCCTTCCCTTGTCAAAAACCACCCTGGCTTCTTTGGAGCTGGTGGCTTTGGCTTTACTAACAATTTTGTACTGCAACCTAATTCTGGAAATGCTAATGGAAACACTTATCGAAGGAAGAAGAATGGATATAGTCAAGGGAGGAGAAGGATGAATTATAAGATGACTGCAGCTCAAAGGGAAGAGATGACTAGGAGGACTGTCTATGTATCTGACATTGATCAGCAGGTCACTGAAGAACAACTTGCTGCTCTGTTCCTAAACTGTGGGCAGGTTGTCGATTGTCGTGTATGTGGTGATCCAAATTCTGTTCTCCATTTTGCCTTTGTTGAGTTTACTGATGAAGATGGTGCGAGGGCGGCTCTAAATCTTTCAGGGACTATGCTCGGTTATTATCCCGTTAGAGTGCTGCCTTCAAAAACTGCAATTGCACCCGTTAATCCACAGTTTCTGCCTAGGTCCGCAGATGAACGAGAGATGTGCTCGAGAACTATATATTGTACAAATATTGACAAGAAGGTTACTCAAGCAGATGTCAAGCTCTTTTTTGAATCACTCTGTGGAGAGGTTCAACGCCTCAGGCTACTTGGAGACTACCATCACTCCACTCGGATTGCTTTTGTTGAGTTCACTATGGCTGAAAGTGCAATTGCTGCTCTTAACTGCAGTGGTGTGGTTCTGGGGTCCCTACCCATAAGGGTAAGCCCATCGAAGACCCCAGTCCGGCCACGCACTCCACGCCCCCAACTGCTCTGA 1215 46.5 MAVAENDGVKIGSSSQSLDDSVVSPQSNPPDEPEKQKPRYDSSISSVEPDSQSNGVDDRKNPLQEKTAASGPTGNYEAHQMGEIQNGFEANGVKVVSNGGGGGGGYRGINQRSSNIHDSNGVVDHDGEESFKRDMRDLAELLSNLNPMAEEFIPPSLVKNHPGFFGAGGFGFTNNFVLQPNSGNANGNTYRRKKNGYSQGRRRMNYKMTAAQREEMTRRTVYVSDIDQQVTEEQLAALFLNCGQVVDCRVCGDPNSVLHFAFVEFTDEDGARAALNLSGTMLGYYPVRVLPSKTAIAPVNPQFLPRSADEREMCSRTIYCTNIDKKVTQADVKLFFESLCGEVQRLRLLGDYHHSTRIAFVEFTMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRTPRPQLL 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3119691 3123599 - Conep05aG0075000.1 Cone5ag0725 437743

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0725 404 SUPERFAMILY RNA-binding domain, RBD 194 296 IPR035979 GO:0003676(InterPro)
Cone5ag0725 404 CDD RRM2_CID8_like 312 393 IPR034825 -
Cone5ag0725 404 CDD RRM1_CID8_like 218 296 IPR034823 -
Cone5ag0725 404 Gene3D - 301 398 IPR012677 -
Cone5ag0725 404 Gene3D - 179 296 IPR012677 -
Cone5ag0725 404 MobiDBLite consensus disorder prediction 104 127 - -
Cone5ag0725 404 MobiDBLite consensus disorder prediction 1 78 - -
Cone5ag0725 404 FunFam Polyadenylate-binding protein-interacting protein 10 310 388 - -
Cone5ag0725 404 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 316 392 IPR000504 GO:0003723(InterPro)
Cone5ag0725 404 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 188 398 - -
Cone5ag0725 404 Pfam RNA recognition motif 221 283 IPR000504 GO:0003723(InterPro)
Cone5ag0725 404 Pfam RNA recognition motif 318 385 IPR000504 GO:0003723(InterPro)
Cone5ag0725 404 MobiDBLite consensus disorder prediction 9 30 - -
Cone5ag0725 404 FunFam Polyadenylate-binding protein-interacting protein 11 182 296 - -
Cone5ag0725 404 SMART rrm1_1 317 388 IPR000504 GO:0003723(InterPro)
Cone5ag0725 404 SMART rrm1_1 220 290 IPR000504 GO:0003723(InterPro)
Cone5ag0725 404 SUPERFAMILY RNA-binding domain, RBD 305 398 IPR035979 GO:0003676(InterPro)
Cone5ag0725 404 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 219 294 IPR000504 GO:0003723(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0725 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag0725 Cone-Chr5:3119691 Cone8ag0590 Cone-Chr8:4950653 4.36E-136 dispersed
Cone1ag1017 Cone-Chr1:55099894 Cone5ag0725 Cone-Chr5:3119691 7.35E-258 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g973 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone1ag1017 Cone5ag0725 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003779 2 1 2 2 1 1 1 1 1 2 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 4 1 45