Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0726 ATGAGCAGCCGCTTTTCTCGCACTATCTATGTTGGCAACTTACCTTCAGACATAAAAGAATATGAAGTTGAGGATTTATTCTATAAGTATGGCCGCATATTGGATATTGAATTGAAGATCCCTCCTCGTCCTCCATGCTATTGCTTTGTTGAGTTTGAGAATGCTCGAGATGCTGAAGATGCAATCAGGGGTCGGGATGGATATAACTTTGATGGTTGTCGCTTAAGGGTTGAGCTTGCCCATGGTGGTAGAGGCCCTCCTTCAAGTGATCGCCGTGGTGGCTATGGGGGTAGTGGCGGTGGCGGTGGCGGCAGTAGTGGGAGCCGGTTTGGTATCTCACGTCATTCAGAATATCGAGTTATTGTTCGTGGACTCCCCTCTTCTGCTTCCTGGCAAGATTTGAAGGATCATATGCGAAAAGCTGGTGATGTATGCTTTGCTGAAGTCTCCCGTGACAGTGAGGGTACTTTCGGTGTGGTTGACTATACTAACAATGATGACATGAAATATGCTATTAGGAAACTTGATGATACCGAATTCAGAAATCCTTGGGCAAGATCATATATTCAGGTCAAGAAGCATGATGGTGGTCCCTCAAGGAGCCGAAGTAGGAGTAGGAGTCGAAGTAGGAGCCGCAGCAGAAGCCGGAGTATAAGACGGAATAGGAGTAGATCAAAAGACCGATCTGTTTCGAGATCAATATCAAGATCCAGATCTCCAACTCCTGTCAAATCTTCCAGACCGCTGTCAAGGTCAAGATCAAGGTCAAGGTCACGATCTGGATCGCCCCCTCAGGAAACAACGAAGAAAGTAAAAGACCATTTCAGCATAAATCCAGAACAATCGAACCGACCTCAAGCAAATCTAAAAGCTCCAGATTTGACTTTGACTACTGGTACGTTTGATATTATGTGCGCTGAATCTTTCAGTAAGAAGAAACTGTTGTTGTCGGCGGATCAACATATTATTAGCGCCGGAAAAGAAGAGAGAGAAAACGACGTCAAGAAAAGCTCAACTACAACAACGCCACCTCCACCTCCACCTCCGACAGCTACCAGCAAACAACCGCCGTTTAGACCCAGATTTGCGCTGGAGTTGGACGGCCTCCACTGTTTTGAGACTCGGATTCGTCCTCTTCTACTGTCTTTCATCGCCTCCTTCCCTTGCCTTCTCCGATTAGACATCCGTCTCTCTCTCAATCAGCAAAATTTTCCTTTCATTTCATCAATCGACGACGATTTCTTCGATTATTTGAGTCACCATTTCCATTCTTTGACCTTGACCATGCTCTGTTCCGTCCCGGCCGGTAAGTCCGGTTCAAATTGGTTGGACCGGCTCCGGTCCAGAAAAGGACTTCCCACCGGCGACGACCTCGATCTCGACTATTTCTTAAGCAACCAAAATCTTAACGCAAGCTTCGATTCTCCGACTCCTGCGGTCTCTAATTCCCCTCAGCTCAACCCCGAGTCGACTCAGTCCGACCATGAACCAGTAGTAACTGATGGTCGGGATCCTCAAATGTCGTCGTTTCCATTCCAGAATGGCGAGCCAGAATTGTTCGGACTTATGACTAACGTCCTTTCTGAACTCTTCAATATGGGAAGCACGTGTGAAAGTTCGAAACTTTCTGGGAAAAAGTTTCCCAGGAAACAAACGAACCCTAGAAACTGCTCCATTTCGGAGAGGGCTGTTAACACAAATTCGGATCTGGTATGTGTTCAGAAAGATGTAAATGTCCTTTCTTCGAACTCGGATAATAGCTTGAAAGGTGAGGAGAAAGTCAAAGCAGGAAATGGTGAAGTTGAAGATTATGAAGAAGAAGAGGAGGAGGAGGAAGAAGAGGGGAAGAGAGAGCTAGTGGGGTACTCGAGGAGTGAGCTGACTGTGATAGATACGAGCGAAGAAGTGTGGAAATCGGATAAGTTGGTTTTTAGGAGGAAGAATGTTTGGAAGGTTAGAGAGAGGAAGGGAAAGATGATGAAGAGCTTAGGGAGGAAGAAGAAGAAGAAGAAGAGGAAGCAACAAGTTAATGATCATTTGCTTCCTCCTCTGAATAAGAAATCTAAAATTTTGGATGAGGAAGAACGTGTGAAACCTGATTCCAATCAAAAACGATGA 2118 45.7 MSSRFSRTIYVGNLPSDIKEYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGRGPPSSDRRGGYGGSGGGGGGSSGSRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGVVDYTNNDDMKYAIRKLDDTEFRNPWARSYIQVKKHDGGPSRSRSRSRSRSRSRSRSRSIRRNRSRSKDRSVSRSISRSRSPTPVKSSRPLSRSRSRSRSRSGSPPQETTKKVKDHFSINPEQSNRPQANLKAPDLTLTTGTFDIMCAESFSKKKLLLSADQHIISAGKEERENDVKKSSTTTTPPPPPPPTATSKQPPFRPRFALELDGLHCFETRIRPLLLSFIASFPCLLRLDIRLSLNQQNFPFISSIDDDFFDYLSHHFHSLTLTMLCSVPAGKSGSNWLDRLRSRKGLPTGDDLDLDYFLSNQNLNASFDSPTPAVSNSPQLNPESTQSDHEPVVTDGRDPQMSSFPFQNGEPELFGLMTNVLSELFNMGSTCESSKLSGKKFPRKQTNPRNCSISERAVNTNSDLVCVQKDVNVLSSNSDNSLKGEEKVKAGNGEVEDYEEEEEEEEEEGKRELVGYSRSELTVIDTSEEVWKSDKLVFRRKNVWKVRERKGKMMKSLGRKKKKKKRKQQVNDHLLPPLNKKSKILDEEERVKPDSNQKR 705
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3127659 3132540 + Conep05aG0075100.1 Cone5ag0726 437744

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0726 705 MobiDBLite consensus disorder prediction 203 226 - -
Cone5ag0726 705 FunFam serine/arginine-rich splicing factor SR34A-like 118 195 - -
Cone5ag0726 705 CDD RRM2_SF2_plant_like 118 193 - -
Cone5ag0726 705 MobiDBLite consensus disorder prediction 81 109 - -
Cone5ag0726 705 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 118 196 IPR000504 GO:0003723(InterPro)
Cone5ag0726 705 SMART rrm1_1 119 192 IPR000504 GO:0003723(InterPro)
Cone5ag0726 705 SMART rrm1_1 8 78 IPR000504 GO:0003723(InterPro)
Cone5ag0726 705 MobiDBLite consensus disorder prediction 582 619 - -
Cone5ag0726 705 MobiDBLite consensus disorder prediction 189 291 - -
Cone5ag0726 705 MobiDBLite consensus disorder prediction 655 675 - -
Cone5ag0726 705 PANTHER FANTOM PROTEIN 429 703 - -
Cone5ag0726 705 Coils Coil 594 614 - -
Cone5ag0726 705 MobiDBLite consensus disorder prediction 325 358 - -
Cone5ag0726 705 MobiDBLite consensus disorder prediction 655 705 - -
Cone5ag0726 705 Gene3D - 2 117 IPR012677 -
Cone5ag0726 705 MobiDBLite consensus disorder prediction 340 355 - -
Cone5ag0726 705 Gene3D - 118 195 IPR012677 -
Cone5ag0726 705 MobiDBLite consensus disorder prediction 685 705 - -
Cone5ag0726 705 CDD RRM1_SF2_plant_like 8 79 - -
Cone5ag0726 705 MobiDBLite consensus disorder prediction 474 495 - -
Cone5ag0726 705 Pfam RNA recognition motif 120 182 IPR000504 GO:0003723(InterPro)
Cone5ag0726 705 Pfam RNA recognition motif 9 76 IPR000504 GO:0003723(InterPro)
Cone5ag0726 705 MobiDBLite consensus disorder prediction 234 265 - -
Cone5ag0726 705 MobiDBLite consensus disorder prediction 474 501 - -
Cone5ag0726 705 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723(InterPro)
Cone5ag0726 705 MobiDBLite consensus disorder prediction 601 615 - -
Cone5ag0726 705 SUPERFAMILY RNA-binding domain, RBD 6 186 IPR035979 GO:0003676(InterPro)
Cone5ag0726 705 FunFam serine/arginine-rich splicing factor SR34A-like 2 117 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0726 K12890 - - mdm:103444323 338.576
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0947 Cone-Chr20:6796195 Cone5ag0726 Cone-Chr5:3127659 3.20E-81 dispersed
Cone3ag0807 Cone-Chr3:4154497 Cone5ag0726 Cone-Chr5:3127659 1.90E-75 dispersed
Cone4ag1864 Cone-Chr4:13363054 Cone5ag0726 Cone-Chr5:3127659 6.59E-11 dispersed
Cone5ag0726 Cone-Chr5:3127659 Cone1ag1327 Cone-Chr1:56422161 2.78E-11 dispersed
Cone1ag1019 Cone-Chr1:55110268 Cone5ag0726 Cone-Chr5:3127659 6.66E-134 transposed
Cone1ag1018 Cone-Chr1:55105300 Cone5ag0726 Cone-Chr5:3127659 1.35E-126 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g967 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone1ag1019 Cone5ag0726 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014488 0 0 0 0 1 1 1 1 1 1 2 1 1 1 0 0 1 2 0 1 1 1 0 1 0 1 0 0 0 0 19