Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0727 ATGGTTGCTGTTGTTTCTTCCCTACAACCCGCCCTCCATTCCTTTTCTTCTTCTACCTCCACATCTACTTTTTCTCATCTCAGTGCAAAAGTCGACGCTTTGTCTGCTCATAAATCAACTTTCTTGAAGTCATCCGAGTGTTTCAGACCCATCCAGATTGCTCCCAGCAAGAACGTTAACCATGGCAGAAGCTATCTTTATCCTGTCCGCATGTCGTGGGACGGTCCACTCTCCTCGGTGAAATTAATTATCCAAGGAAGGAATTTAGAGTTAACTGAAGCATTGAAGAAGCATGTGGAAGATAAGGTAGGCAAGGCAGTTCAGAAGCACTGTAATTTAGTGAGAGAAGTTGATGTTAGATTATCAGTCAGAGGTGGAGAGTTTGGGAAAGGTCCAAGAATTAGGAGATGCGAGATAACTTTGTTCACCAAAAAGCATGGAGTGATTCGGGCCGAGGAGGATGCTGAGACCACCTATGCAAGTATAGATTTGGCGTCTTCGATTACACAAAGAAAGTTGAGGAAGATTAAAGAGAAGGATTCCGATCATGGTCGACACATGAAGGGCTTTGACAGATTGAAGGTTAGAGAGCCTACCATTCCACAAATCTCAGTTGAAGATGATGAAGAAGAGGATGTTTCTCAAGAACAGGATGCAGATCAGTTAGTTGATGAGATTGTTCGGACAAAGCATTTCGACATGCCACCATTGACAGTCAATGAAGCAATAGAGCAGCTGGAAAACCTTGATCATGACTTCTATGCTTTCAGAAATGAAGAAACTGGTGAGATTAATATATTGTACAAAAGGAAAGCTGGAGGGTATGGGCTTATCATACCAAAAGAAAATGGTGACGCTGAGAAAATGGAGGTTAAACCAGCTAGAGAACCTTCCTTGGCTGAAATAAATCAATCTTAA 918 42.16 MVAVVSSLQPALHSFSSSTSTSTFSHLSAKVDALSAHKSTFLKSSECFRPIQIAPSKNVNHGRSYLYPVRMSWDGPLSSVKLIIQGRNLELTEALKKHVEDKVGKAVQKHCNLVREVDVRLSVRGGEFGKGPRIRRCEITLFTKKHGVIRAEEDAETTYASIDLASSITQRKLRKIKEKDSDHGRHMKGFDRLKVREPTIPQISVEDDEEEDVSQEQDADQLVDEIVRTKHFDMPPLTVNEAIEQLENLDHDFYAFRNEETGEINILYKRKAGGYGLIIPKENGDAEKMEVKPAREPSLAEINQS 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3132623 3134434 - Conep05aG0075200.1 Cone5ag0727 437745

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0727 305 CDD RaiA 81 179 IPR003489 GO:0044238(InterPro)
Cone5ag0727 305 Hamap Ribosome hibernation promoting factor [hpf]. 80 281 IPR034694 -
Cone5ag0727 305 Gene3D - 81 191 IPR036567 -
Cone5ag0727 305 Pfam Sigma 54 modulation/S30EA ribosomal protein C terminus 224 277 IPR032528 -
Cone5ag0727 305 NCBIfam ribosome-associated translation inhibitor RaiA 81 184 IPR003489 GO:0044238(InterPro)
Cone5ag0727 305 Pfam Sigma 54 modulation protein / S30EA ribosomal protein 83 179 IPR003489 GO:0044238(InterPro)
Cone5ag0727 305 Gene3D - 236 288 IPR038416 -
Cone5ag0727 305 FunFam ribosome-binding factor PSRP1, chloroplastic 236 287 - -
Cone5ag0727 305 PANTHER 30S RIBOSOMAL PROTEIN 22 291 IPR050574 GO:0022627(PANTHER)|GO:0043024(PANTHER)|GO:0045900(PANTHER)
Cone5ag0727 305 MobiDBLite consensus disorder prediction 282 305 - -
Cone5ag0727 305 SUPERFAMILY Ribosome binding protein Y (YfiA homologue) 81 186 IPR036567 -
Cone5ag0727 305 FunFam Ribosome-binding factor PSRP1, chloroplastic 82 184 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0727 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1020 Cone-Chr1:55112143 Cone5ag0727 Cone-Chr5:3132623 1.40E-171 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g964 . . . Bda07g01958 . . . Bma14g02029 Cmo16g00020 . . . . . . . Cpe14g00016 . . . . . . . . . . . . . . Cone1ag1020 Cone5ag0727 . . . . . . . Blo09g00002 . . . . . . . . . . . Car16g00017 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012302 1 1 1 1 0 1 1 1 1 0 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 29