Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0728 ATGGGAGAGGTGGTGGTGAGCAGTGAAGAAATGGAAGATAGAAGGCAGAGTGATACAGAGATGGAGGAGACGGAAGAGAAGAGGAACAAGGATGGGAGTTCAGCTGGTGTTGCTGTGAAGTGGGAGAGATTTTTGCAGAGGATGAATCTTAGAGTATTGGTGGTCGAAGCTGATGATTCAACGAGGCAGATTATCGTTGCGCTTCTTAGAAAATGTAGCTACAAAGTTGCTGCTGTTCCTGATGGCCTAAAGGCATGGGAGCTACTTAAGAAAAGTCCCCACAATGTAGATCTCATATTAACAGAAGTGGATCTACCATCAATATCTGGATTTGCTCTACTGACATTAATGATGGAGCACGAGATTTGCAAAAATATTCCTGTTATAATGATGTCCTCAAAGGATTCTATTAATACTGTTTACAAATGCATGACAAGAGGCGCTGCAGACTACCTTGTTAAGCCCATTAGGAGAAATGAGCTTAGAAATCTGTGGCAGCATGTTTGGAGAAGACAATCTTCAACTGCTCACAGAAAGAGACCAAGAGATGAGATTGTTGCACTACAAAAGGTTGAGGCCACTTCAGAGAATGACAGTGCAAGCAATCATTCAAGTGGTAACATTGCCAATATGCAGAGGAATAAGAAATATGTTGAGAAAGGGAGCGACGTTCAGAGCTCCTGTACAAAGCCAGATTTTGAAGCCGAGAGCACTCACATGGAAAATATTCGGGAATCTTTTGAGCTGAACGTGAGACAATTATCTCTTAGTCACTTGAAGTTACAACAGGCTGACGCTGAAACCGAATTAAGCCAGAAACTGCCTACACATGAAAGTGAAGCTGGAGCTGGTGCAGATGAAGATACCGATGCCGCAATTACTCTAAGCATTGGTGTAGAGCCAAGCAGTCTAAGGATTGATACTTACATAGCTCGTGAAGAATGTAACAATAATATTGCCCCTGCCTGCACTTCTAGAGATGCTAGTAACTTGATTCAGGCGTTTGCCAACAATCCAAGCTTCACTCTAAGGACTTCTCCAAGTAATTGTACAAGCAACTTTGGTTGTAATCCTCAGTTGGATCTTCCCTTCAGAACATGTCATCTCAATGGTTTTCAAGATAGCAGAGCTGAAGAGTGGCATACTCTTAGGCAATCCAATATCTCAGCATTTACACGATACTCTAACAAGCCATTGCAGCATCTCCAGCAAAAGCTGGACCTAACTTGTGATCAACATAAGGAATATGAAACAAATGCTGAGAAACATTCAATTCCTACTACTGCTACTAGTGGCTATGACTCTGATTTCCCTGGTCCCACACTAAGCCTGCAAAATAGGACACGTTCTCTGGCTACTGGTCAATCCAACCAATCTACTATTACAACAATCCCTGTTCCCATTTTAGTGAAAGGTGTAAGGCTTAATAATAACCAATCCTCTGGCTATGGTTCTGTGTTTTCTCCTATATTCTATACACAGCCAGCTTCTTCACCTTCACCAAACCAATCTGTCCATCCTGTATCTTCTGCCTTTCAAATGAACACATTCCATCACTCAAATATCGAAAATCATAACTCTGAGCATCCATGTGAACAAAATGCTAACTCTGTCATAAACCAACGATCAGTACAAAAGCAGGGATACAGAAACTTGGATTTTTTTGAGGATCAAGCGCATATCTCTCCTAGCACGGATCACAGTTCAAGTAGTAGCTTCTGTAATGGAGCAGTAAGTCATCTTAATAGCACGGGTTATGGAAGCGCCTGTGGAAGCAACAATAATAGCATGAATCCGGGTGCCATTGTCAGGCCTGCACCAGAGAACAAGAATGAAGAAGCTTTCTTCCCTCACATGGGAAATTATAATCAGCCTACACAGAGAGAAGCAGCTCTCACTAAGTTCCGGTTGAAACGTAAAGATAGATGCTACGAGAAAAAGGTTCGATATGAGAGCAGAAAAAAACTTGCAGAGCAACGGCCTCGAGTGAAAGGGCAATTTGTTAGGCAAGTTCAAATGGATCCATCATCTTCGGACAATAATGGCAACTCTCTTAAGGGTTTTATTCAACTCAAGGCCTCGGAATGA 2088 42.19 MGEVVVSSEEMEDRRQSDTEMEETEEKRNKDGSSAGVAVKWERFLQRMNLRVLVVEADDSTRQIIVALLRKCSYKVAAVPDGLKAWELLKKSPHNVDLILTEVDLPSISGFALLTLMMEHEICKNIPVIMMSSKDSINTVYKCMTRGAADYLVKPIRRNELRNLWQHVWRRQSSTAHRKRPRDEIVALQKVEATSENDSASNHSSGNIANMQRNKKYVEKGSDVQSSCTKPDFEAESTHMENIRESFELNVRQLSLSHLKLQQADAETELSQKLPTHESEAGAGADEDTDAAITLSIGVEPSSLRIDTYIAREECNNNIAPACTSRDASNLIQAFANNPSFTLRTSPSNCTSNFGCNPQLDLPFRTCHLNGFQDSRAEEWHTLRQSNISAFTRYSNKPLQHLQQKLDLTCDQHKEYETNAEKHSIPTTATSGYDSDFPGPTLSLQNRTRSLATGQSNQSTITTIPVPILVKGVRLNNNQSSGYGSVFSPIFYTQPASSPSPNQSVHPVSSAFQMNTFHHSNIENHNSEHPCEQNANSVINQRSVQKQGYRNLDFFEDQAHISPSTDHSSSSSFCNGAVSHLNSTGYGSACGSNNNSMNPGAIVRPAPENKNEEAFFPHMGNYNQPTQREAALTKFRLKRKDRCYEKKVRYESRKKLAEQRPRVKGQFVRQVQMDPSSSDNNGNSLKGFIQLKASE 695
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3135786 3139743 + Conep05aG0075300.1 Cone5ag0728 437746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0728 695 CDD psREC_PRR 52 155 - -
Cone5ag0728 695 SUPERFAMILY CheY-like 44 181 IPR011006 -
Cone5ag0728 695 MobiDBLite consensus disorder prediction 7 33 - -
Cone5ag0728 695 ProSiteProfiles Response regulatory domain profile. 51 169 IPR001789 GO:0000160(InterPro)
Cone5ag0728 695 MobiDBLite consensus disorder prediction 422 439 - -
Cone5ag0728 695 MobiDBLite consensus disorder prediction 1 34 - -
Cone5ag0728 695 Gene3D - 48 322 - -
Cone5ag0728 695 MobiDBLite consensus disorder prediction 417 439 - -
Cone5ag0728 695 Pfam Response regulator receiver domain 52 163 IPR001789 GO:0000160(InterPro)
Cone5ag0728 695 Pfam CCT motif 628 670 IPR010402 GO:0005515(InterPro)
Cone5ag0728 695 MobiDBLite consensus disorder prediction 267 289 - -
Cone5ag0728 695 ProSiteProfiles CCT domain profile. 628 670 IPR010402 GO:0005515(InterPro)
Cone5ag0728 695 SMART REC_2 50 165 IPR001789 GO:0000160(InterPro)
Cone5ag0728 695 Coils Coil 399 419 - -
Cone5ag0728 695 MobiDBLite consensus disorder prediction 670 695 - -
Cone5ag0728 695 PANTHER TWO-COMPONENT RESPONSE REGULATOR 29 273 IPR045279 GO:0009736(InterPro)
Cone5ag0728 695 MobiDBLite consensus disorder prediction 655 695 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone2ag0830 Cone-Chr2:34314094 Cone5ag0728 Cone-Chr5:3135786 1.73E-27 dispersed
Cone3ag0296 Cone-Chr3:1530099 Cone5ag0728 Cone-Chr5:3135786 1.55E-45 dispersed
Cone5ag0728 Cone-Chr5:3135786 Cone8ag0716 Cone-Chr8:7215291 2.22E-21 dispersed
Cone1ag1021 Cone-Chr1:55118294 Cone5ag0728 Cone-Chr5:3135786 0 wgd
Cone18ag0978 Cone-Chr18:7213447 Cone5ag0728 Cone-Chr5:3135786 5.80E-93 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46148 PF00170 bZIP_1 7.40E-14 CL0018 Cone TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0728 K12130 - mdm:103439942 619.002