Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0730 ATGGAGAACTCAACGCAGGAATCTCACCTGAGATCGGAATATTCCGTTACCTATGAATCGCCTTACCCGATCTACTCCATGGCCATCTCCTCATCCGCCCCATCTCGGAGCTACCACAGCAACCACCACCACCGCATCGCCGTCGGCAGTTTCATTGAAGAATACACAAACCGGGTCGACATCGTCTCCTTCGATCCAGACACACTCTCGGTCAAAACCAACCCTTCTCTCTCCTTTGACCACCCTTACCCACCCACCAAGCTCATGTTCCACCCCAACGCTCCCTCCTCCCTCCGCAAATCCTCCGGCGACGTGTTAGCCTCCTCCGGCGACTATCTCCGCCTCTGGGAAGTTCGAGAAAACTCCGTCGAACCCATCTCCGTCCTCAACAACAGCAAAACCAGCGAGTTCTGCGCCCCCTTGACCTCCTTCGACTGGAACGAGGTCGAGCCCAAACGGATCGGAACTTCCAGCATCGACACGACCTGTACAATCTGGGACATAGAGAAATCCGTCGTAGAAACCCAGCTCATCGCTCACGATAAAGAAGTCTACGACATTGCCTGGGGAGAAGCTAGGGTTTTCGCCTCCGTTTCGGCCGATGGATCGGTCAGAATCTTCGATTTAAGAGACAAAGAGCACTCCACCATTATTTACGAGAGCCCCACGCCGGAAACTCCTCTGCTCAGACTCGCTTGGAACAAGCAGGACTTGAGGTACATGGCTACCATTTTAATGGATAGTAATAAAGTTGTGATTTTAGACATTCGATCGCCTACTATGCCGGTGGCTGAGCTGGACAGGCATAGGGCTAGTGTGAATGCGATCACATGGGCGCCGCATAGTAGCCGGCATATATGCTCAGCAGGGGACGATACGCAGGCACTTATTTGGGAGTTGCCTACGGTGGCAGGCCCCAACGGGATCGACCCCTTGTCTATGTACTCTGCCGGGTCCGAGATTAATCAGTTGCAGTGGTCTTCGGCCCAGCCCGATTGGATTGCGGTCGCATTTTCGAACAAGATGCAACTTTTGAAAGTTTGA 1044 53.26 MENSTQESHLRSEYSVTYESPYPIYSMAISSSAPSRSYHSNHHHRIAVGSFIEEYTNRVDIVSFDPDTLSVKTNPSLSFDHPYPPTKLMFHPNAPSSLRKSSGDVLASSGDYLRLWEVRENSVEPISVLNNSKTSEFCAPLTSFDWNEVEPKRIGTSSIDTTCTIWDIEKSVVETQLIAHDKEVYDIAWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPTPETPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTMPVAELDRHRASVNAITWAPHSSRHICSAGDDTQALIWELPTVAGPNGIDPLSMYSAGSEINQLQWSSAQPDWIAVAFSNKMQLLKV 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3143475 3145487 - Conep05aG0075500.1 Cone5ag0730 437748

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0730 347 PANTHER WD REPEAT CONTAINING PROTEIN 4 347 IPR045159 GO:0005634(PANTHER)
Cone5ag0730 347 Gene3D - 5 346 IPR015943 GO:0005515(InterPro)
Cone5ag0730 347 ProSiteProfiles Trp-Asp (WD) repeats profile. 266 300 IPR001680 GO:0005515(InterPro)
Cone5ag0730 347 FunFam WD repeat-containing protein LWD1 11 346 - -
Cone5ag0730 347 ProSiteProfiles Trp-Asp (WD) repeats profile. 177 217 IPR001680 GO:0005515(InterPro)
Cone5ag0730 347 SUPERFAMILY WD40 repeat-like 42 343 IPR036322 GO:0005515(InterPro)
Cone5ag0730 347 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 266 300 - -
Cone5ag0730 347 SMART WD40_4 122 167 IPR001680 GO:0005515(InterPro)
Cone5ag0730 347 SMART WD40_4 170 208 IPR001680 GO:0005515(InterPro)
Cone5ag0730 347 SMART WD40_4 72 117 IPR001680 GO:0005515(InterPro)
Cone5ag0730 347 SMART WD40_4 259 299 IPR001680 GO:0005515(InterPro)
Cone5ag0730 347 ProSitePatterns Trp-Asp (WD) repeats signature. 286 300 IPR019775 -
Cone5ag0730 347 Pfam WD domain, G-beta repeat 262 298 IPR001680 GO:0005515(InterPro)
Cone5ag0730 347 Pfam WD domain, G-beta repeat 176 208 IPR001680 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0730 K11805 - - mdm:103406603 588.186
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0003 Cone-Chr11:43465 Cone5ag0730 Cone-Chr5:3143475 1.57E-154 dispersed
Cone18ag1474 Cone-Chr18:9840314 Cone5ag0730 Cone-Chr5:3143475 2.58E-153 dispersed
Cone1ag1023 Cone-Chr1:55126303 Cone5ag0730 Cone-Chr5:3143475 7.69E-250 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g958 . . Bda05g00144 . . . Bma10g01322 . Cmo16g00019 . . . . . . . Cpe14g00015 . . . . . . . . . . . . . . Cone1ag1023 Cone5ag0730 . . . . . . Blo07g00313 . . . . . . . . . . Cma16g00016 . Car16g00016 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001974 2 3 2 4 2 2 3 2 2 2 2 2 2 2 2 3 2 4 2 2 2 2 2 2 2 1 2 2 3 1 66