Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0734 ATGCCACCTGTTCAAGTTGTTGAAGTCTCCGAAACCGAGAAAGAGGTCCGGATCGACTCCTCCATCGATGGACCACACAAGAAGCTTCAGAATCTCGATGAACCGATTGTTGAGGACGTGAAGGACGACGGCAAGGACGAAGACGATGATGAAGATGACGACGACGAAGAAGATGACGATAAGGAAGATGGAAGTCCCGGTGCAAATGATGGTTCTAAGCAGAGTAGGAGCGAGAAGAAAATCCGCAAGGCAATGTTGAAGTTGGGTATGAAGCCTGTTACAGATGTTAGCAGAGTGACCATCAAAAGAACAAAAAACATGCTGTTTTTCATCTCGAAACCCGATGTCTTCAAAAGCCCAAATTCAGAGACCTATGTCATCTTTGGAGAGGCGAAGATAGAGGATCTGAGCTCTCAGTTGCAGACACAGGCGGCCCAGCAATTCAGAATGCCTGACATGGGGTCTGTCATGGCAAAATCCTATAATACGGGGTCCACTCCAGGTGTCCCCCCACCGGCTGAGGAGGAAGAGGAAGTGATGATAGATGAAGCCGGAGTGGAGCCCAGAGACATCGATTTGGTGATGACACAAGCAGGGGTGCCTAGGAGCAAGGCCGTCAAGGCTCTAAAGACTCACAGTGGGGACATTGTTAGTGCTATTATGGAGCTCACTACTTGA 678 49.12 MPPVQVVEVSETEKEVRIDSSIDGPHKKLQNLDEPIVEDVKDDGKDEDDDEDDDDEEDDDKEDGSPGANDGSKQSRSEKKIRKAMLKLGMKPVTDVSRVTIKRTKNMLFFISKPDVFKSPNSETYVIFGEAKIEDLSSQLQTQAAQQFRMPDMGSVMAKSYNTGSTPGVPPPAEEEEEVMIDEAGVEPRDIDLVMTQAGVPRSKAVKALKTHSGDIVSAIMELTT 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3161042 3162841 + Conep05aG0075900.1 Cone5ag0734 437752

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0734 225 Gene3D - 84 137 IPR038187 -
Cone5ag0734 225 Pfam HYPK UBA domain 186 224 IPR044034 -
Cone5ag0734 225 MobiDBLite consensus disorder prediction 40 64 - -
Cone5ag0734 225 PANTHER NASCENT POLYPEPTIDE ASSOCIATED COMPLEX ALPHA SUBUNIT-RELATED 23 225 IPR016641 GO:0005737(PANTHER)|GO:0005854(InterPro)|GO:0006612(PANTHER)|GO:0051082(PANTHER)
Cone5ag0734 225 Gene3D - 186 223 - -
Cone5ag0734 225 Pfam NAC domain 78 133 IPR002715 -
Cone5ag0734 225 ProSiteProfiles NAC A/B domain profile. 75 140 IPR002715 -
Cone5ag0734 225 SMART NAC_2 78 134 IPR002715 -
Cone5ag0734 225 CDD NAC_NACA 89 136 - -
Cone5ag0734 225 CDD UBA_NAC_euk 188 224 - -
Cone5ag0734 225 MobiDBLite consensus disorder prediction 10 39 - -
Cone5ag0734 225 MobiDBLite consensus disorder prediction 1 79 - -
Cone5ag0734 225 FunFam Putative nascent polypeptide-associated complex subunit alpha 186 223 - -
Cone5ag0734 225 FunFam Nascent polypeptide-associated complex (NAC), alpha subunit 85 137 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0734 K03626 - - rcu:8270842 267.314
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag0505 Cone-Chr3:2507824 Cone5ag0734 Cone-Chr5:3161042 1.23E-53 dispersed
Cone3ag0506 Cone-Chr3:2510166 Cone5ag0734 Cone-Chr5:3161042 4.51E-54 dispersed
Cone1ag1027 Cone-Chr1:55142430 Cone5ag0734 Cone-Chr5:3161042 6.99E-80 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g953 . . . . . . . . . . Cma02g01148 . Car02g00953 . . Cpe05g00575 . . . . . . . . Cla01g00001 . . . Clacu01g0001 Cmu01g0001 Cre09g2503 Cone1ag1027 Cone5ag0734 . . . . . . . . . Bda15g00799 . . . . . Cmo02g01184 . . . . . . . Bhi12g00740 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001063 2 3 1 2 2 2 3 2 2 2 3 3 5 2 2 5 3 6 3 2 1 2 3 2 2 2 3 5 2 2 79