Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0738 ATGGGTGAAGAAGCTAAGCAGGAACAAGCTAAGGCGGAACAGAAGGACGAGAAGGTAGAGGAGAAGAAGGAAGAGAAACCGGAAGAGAAGAATGAAGAGAAACCGGTGGAGGGGGAGGAGAAGAAGAAGAAAGAGGAGCCGCCACAACCTCCTCCTCCTTTTGTCTTGTATGTAGACTTGCATTGTGTTGGATGTGCAAAGAAGATGGAAAAATGTATCATGAAGATTAGAGGAGTGGAAGGGGTTGCAATAGACATGGGTAAAAATGAGGTGACAATAAAGGGAGTAGTAGATCCACAAGCTCTGTGCAGCAAAATCATGAAGAAGACAAAAAGAAGGGCAAATGTTTTATCTCCATTGCCCCCGGCTGAGGGTGAACCTATTCCTCAACTTGTTACTTCACAGGTTAGTGGATTGATTACAGTGGAACTGAGTGTTAACATGCACTGTGAGGCCTGTGCAGAGCAACTGAAGAAGAAGATACTCAAAATGAGAGGAGTGCAAACAGCAGTGACGGAACATAGTACAGGAAAAGTGATAGTGACAGGAACAATGGATGCAAATAAGCTAGTTGAATATGTATATAGACGCACCAAAAAGCAAGCTCAGATAGTCCCACAGCCGGAGCCTGAATCGGAGAAGAAAGAAGAAGAAAACAAAGAGGCTGAAAAAGCAGCCGGAGAAGGAGAAGCAAAGAGTGAAGAAAAGAAGGAAGAGAATGCTACAGAAGAGAAGAAGAAAGAGGAAGAACAGAAACCAGCCGAAGGAGAGGAAGCAAAGAAAGAAGAAGGTGGTGGTGGTGATGATAAGAAGCAAGAAGAGAGCAACACTGCAAACAAAGAAGGAGGAGGAGGAGGAGGAGATCAGAATGATCTGAGTAATCTTGTAAACAATTACTACGTTGAGGAGGAAAATATGAAGAGGATGATGTATTACTATCAGCCTCTCTATGTGGTTGAACGTATCCCACCTCCTCAGCTGTTCAGTGATGAAAACCCTAATGCATGTTGCATTTCATGA 1020 43.73 MGEEAKQEQAKAEQKDEKVEEKKEEKPEEKNEEKPVEGEEKKKKEEPPQPPPPFVLYVDLHCVGCAKKMEKCIMKIRGVEGVAIDMGKNEVTIKGVVDPQALCSKIMKKTKRRANVLSPLPPAEGEPIPQLVTSQVSGLITVELSVNMHCEACAEQLKKKILKMRGVQTAVTEHSTGKVIVTGTMDANKLVEYVYRRTKKQAQIVPQPEPESEKKEEENKEAEKAAGEGEAKSEEKKEENATEEKKKEEEQKPAEGEEAKKEEGGGGDDKKQEESNTANKEGGGGGGDQNDLSNLVNNYYVEEENMKRMMYYYQPLYVVERIPPPQLFSDENPNACCIS 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3176854 3178929 - Conep05aG0076300.1 Cone5ag0738 437756

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0738 339 CDD HMA 55 114 IPR006121 GO:0046872(InterPro)
Cone5ag0738 339 SUPERFAMILY HMA, heavy metal-associated domain 135 196 IPR036163 GO:0046872(InterPro)
Cone5ag0738 339 SUPERFAMILY HMA, heavy metal-associated domain 55 108 IPR036163 GO:0046872(InterPro)
Cone5ag0738 339 CDD HMA 143 202 IPR006121 GO:0046872(InterPro)
Cone5ag0738 339 Gene3D - 137 204 - -
Cone5ag0738 339 Coils Coil 2 32 - -
Cone5ag0738 339 MobiDBLite consensus disorder prediction 1 48 - -
Cone5ag0738 339 MobiDBLite consensus disorder prediction 1 51 - -
Cone5ag0738 339 MobiDBLite consensus disorder prediction 209 277 - -
Cone5ag0738 339 Pfam Heavy-metal-associated domain 56 108 IPR006121 GO:0046872(InterPro)
Cone5ag0738 339 Pfam Heavy-metal-associated domain 145 192 IPR006121 GO:0046872(InterPro)
Cone5ag0738 339 ProSiteProfiles Heavy-metal-associated domain profile. 51 114 IPR006121 GO:0046872(InterPro)
Cone5ag0738 339 Gene3D - 53 124 - -
Cone5ag0738 339 ProSiteProfiles Heavy-metal-associated domain profile. 139 203 IPR006121 GO:0046872(InterPro)
Cone5ag0738 339 MobiDBLite consensus disorder prediction 200 293 - -
Cone5ag0738 339 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 9 1 339 IPR044258 GO:0046872(InterPro)
Cone5ag0738 339 Coils Coil 212 252 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0738 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0057 Cone-Chr1:294612 Cone5ag0738 Cone-Chr5:3176854 5.73E-26 dispersed
Cone5ag0738 Cone-Chr5:3176854 Cone5ag1803 Cone-Chr5:12779493 7.30E-28 dispersed
Cone1ag1031 Cone-Chr1:55162315 Cone5ag0738 Cone-Chr5:3176854 2.30E-109 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g949 . . . . . . . . Cmo16g00013 Cmo18g01380 . . . . . . Cpe14g00012 . . . . . . . . . . . . . . Cone1ag1031 Cone5ag0738 . . . . . . . . . . . . . . . . . Cma16g00012 Cma18g01346 Car16g00010 Car18g01258 Cpe09g00006 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013892 0 0 0 0 0 0 2 0 0 0 0 0 2 0 0 2 0 2 1 0 0 1 1 1 1 0 1 2 2 2 20