Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0740 ATGCCCGCCCCTTCAATCTCTTCAGCTCTGCTTGTCTTTCTCGTTTCCTTCACCTTCTTCAATCCAACAATCTATTCAACCAACGAACTTGCCCACTACGCAAAACAAATTTTGATCGCAGCTCAACGAGAGAAAGATTGGTTGGTATCAATCAGAAGGAAAATCCACGAAAACCCAGAACTCCGATTCCAAGAATTCAACACCAGCTCTCTTGTCCGAAGAGAGCTTGATAAGCTCGGCATCAATTACTCATATCCACTTGCCAAAACCGGCGTCGTTGCTGAGATTGGCTCTGGATCTTCCCCCACTGTAGCTCTTCGAGCTGACATGGATGCTCTCCCACTGCAAGAGCTTGTGGAATGGAAGCATAAAAGTAAGATTGATGGGAAAATGCACGGTTGTGGACACGATGCCCATACAACGATGCTTCTTGGTGCTGCTAAGTTGCTTGTTCAAAGAAAAGATAAGCTTAAGGGAACGGTGAGACTTATTTTTCAACCGGCTGAGGAGGGAGGAGCCGGAGCATCCCATATGATAAGGGAAGGTGCTCTTGGCAAAGCAGAAGCAATATTTGCTATGCACATTGATGCTAGAAGGCCCACAGGCACCATATCTTCCATTTCGGGGCCGTTCTTGGCTGCAACATCCAATTTTGAAGCAAAGATAGTAGGAAATGGCGGAAATGCTGCCAACTCACATTCTAGTGTGGACCCCATACTCGCCACATCTTTCGCCATCTTGGCTTTGCAACAGCTCATATCCCAGGAACGTAATCCCCTCATCAGCCAAGTCCTATCTGTAACTTACGTGAGGGGTGGGGCCGAGCTCGACATCAATCCGCCCTATGTTGAATTTGGAGGCTCATTGAGAAGCCTTGAGACTGAAGGTCTACTGCAACTTAGGAAGCGCCTGAAAGAGGTCATTGAAGGGCAGGCTGCAGTGCATAGATGTAAGGCATATACAGACTTGAAAGACGAAGAGCATCCTCTATACCCTGCTGTAGTGAATGATGATGCCTTACATCGCCATGTGGAGAGGGTCGGAAAGCTTCTTGTGGGACCGGAGAATGTGTGGGAGGATACGAAGGTGATGGCAGGTGAAGACTTTGCTTTCTATCAACAAGTCATACCGGGTTCAATGTTGAGCATCGGAATAAGAAACGAGGATGTTGGGTCCACTCACATGCCGCATTCGTCTCACTTCTTTCTTGATGAAGATGTGCTTCCGATTGGGGCTGCATTGCATACTGTTCTTGCTGAGACGTACTTGAATGAGAACCAAATATGCAAAGTACTTGAAGTAACCAATCCAGAGACAATTTGTGCTTGA 1329 47.1 MPAPSISSALLVFLVSFTFFNPTIYSTNELAHYAKQILIAAQREKDWLVSIRRKIHENPELRFQEFNTSSLVRRELDKLGINYSYPLAKTGVVAEIGSGSSPTVALRADMDALPLQELVEWKHKSKIDGKMHGCGHDAHTTMLLGAAKLLVQRKDKLKGTVRLIFQPAEEGGAGASHMIREGALGKAEAIFAMHIDARRPTGTISSISGPFLAATSNFEAKIVGNGGNAANSHSSVDPILATSFAILALQQLISQERNPLISQVLSVTYVRGGAELDINPPYVEFGGSLRSLETEGLLQLRKRLKEVIEGQAAVHRCKAYTDLKDEEHPLYPAVVNDDALHRHVERVGKLLVGPENVWEDTKVMAGEDFAFYQQVIPGSMLSIGIRNEDVGSTHMPHSSHFFLDEDVLPIGAALHTVLAETYLNENQICKVLEVTNPETICA 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3189171 3191174 - Conep05aG0076500.1 Cone5ag0740 437758

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0740 442 NCBIfam amidohydrolase 48 411 IPR017439 GO:0016787(InterPro)
Cone5ag0740 442 SUPERFAMILY Bacterial exopeptidase dimerisation domain 213 332 IPR036264 -
Cone5ag0740 442 CDD M20_IAA_Hyd 48 423 IPR044757 GO:0009850(InterPro)|GO:0016787(InterPro)
Cone5ag0740 442 Gene3D Zn peptidases 49 416 - -
Cone5ag0740 442 PANTHER PEPTIDASE M20 FAMILY MEMBER 23 427 IPR017439 GO:0005783(PANTHER)|GO:0009850(PANTHER)|GO:0010179(PANTHER)|GO:0016787(PANTHER)|GO:0016787(InterPro)
Cone5ag0740 442 PIRSF Amidohydrol_AmhX 34 427 IPR017439 GO:0016787(InterPro)
Cone5ag0740 442 SUPERFAMILY Zn-dependent exopeptidases 40 426 - -
Cone5ag0740 442 Pfam Peptidase family M20/M25/M40 105 419 IPR002933 GO:0016787(InterPro)
Cone5ag0740 442 FunFam N-acetyldiaminopimelate deacetylase 213 331 - -
Cone5ag0740 442 Gene3D - 213 332 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0740 K14664 - - mdm:103444396 606.675
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0442 Cone-Chr20:2235493 Cone5ag0740 Cone-Chr5:3189171 1.34E-140 dispersed
Cone3ag0162 Cone-Chr3:873233 Cone5ag0740 Cone-Chr5:3189171 2.63E-128 dispersed
Cone5ag0740 Cone-Chr5:3189171 Cone7ag1200 Cone-Chr7:8922968 1.48E-131 dispersed
Cone5ag0740 Cone-Chr5:3189171 Cone1ag1032 Cone-Chr1:55166478 5.03E-160 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g947 . . Bda05g00152 Bda07g01963 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone1ag1032 Cone5ag0740 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0023690 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2 3