Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0756 ATGGATATGGAAAGTAATTCCCTAAACGAACCCAAGAAATTGGAACAAATTGTTTCCCAATTTCTCTTGAAATGCCTCCATGTTATTCTGGACTCGAGAATTCCTTCCCTTCATTCACATGACAATAGCGGTGACCTTTCATCGCAACCTCGAGTCCGTAAAAGTGATAAATGGTTCAACTTAGCACTAGGCGACCGCCCTGCTGCTCTAAACAACTTGAATTTCTGGCATAGAAATGTAATGGATCCAATGATAATTGATATAATTCTTGTCCATAATCAGCCCGATTCATCTACTGCTGCTCTACCTGGGTCATCATCATCTATTGAGACTGTTATTGAGAGATGGGTTGTTCAGTACAAATCTCCACACACTTTTTCTCCCCAATCCGGGGAAAGTTTTCTCTCTTACAAAAAGACATACCAGAAGTCAATCATTCTTCTACGTTCCCTTTTTACACGAATGAGGCTTCTTCCGGCTTATCGAATCTTTCGCCAGCTAAGTACCTCAAGCCAGACTTATGACTTCGACATTATATATAAGGTGTCTTCATTTAGTGATCCGTTCTCAATTGTAGAGGAGGAAATGGTGAAGGATCATAGCTTTTCATCTATAGAGGCTCCTCCTGGTCGCCTTTCTGTATCTCTTGCTTATCGTCCCACACTAGCTGATTTTAACCTTGAATGCTCTACATCACTACCGCCAATGATTATTATGGATTATGTAGGGAGTCCAACCACTGATCCTCTAAGGTTTTTTCCCTCTACAGAGAAAGGTGTCTGTGCTACATCCTTTCCATTGAGAGGACAACAATCTCCCACTTCTGGGCCGTTTCAACGTCCACATAGTTGGACTAGTGGATTTCAAAGAGCAGCTACTTTTGCAGAGAATCGAGTTTATTATGGATCTCCTCCTGCAAGTCGAAAATCTTCTATGCCATATGATTTTCCATCTCCGTCTAGTGATCTTTATGGTAATAGAGGTCAGAATGTTAGACCATTGGCTTATCTACATTCACAGACCAATATAAATGATGAATATCAACTTTCACCCCCATTTTCATCATCCCCTTCTCCATCTCCATCTCCTCCAACGTACTTTGCCAGTGGAATGAAATCCCGTATGCATTCACAAACCTCCCCTGTATCTATACCAATTCAGATGGGAAAAAGTTCTAGATATGTTTCTCCTAACTTTTCAGATCCCAATAGACATTCTCTTCCACCTTTATCTCCAAGAAGCATTAAGAATGATAATTCTTCACATGAATCTCCATCCGGAATCAGGTCATATCGGAAAGAGATATTAAGATCTGGGGAGTTTCAGTCAGGGATGGCAAATCATTATTCCAGTCCAAAGGTGGCCAGAGATAGCAAAGATGAATCGGGTAGATTTTCGGGATTGCTATCTTCTAGTGGCTCACCACGAATTGGATTTTCAAGGAGCTCCAGTAGATTATCGTTCCAGGATGACACTGATGATGGTGATTTCTCATGTCCTTTTGACTTTGATGATGTTGAAACCCCAGATTTTCTTCTCAGAAAAAGAACATCAGAGTTTACTTCTCAGTCATTACCACTTGGTACAAAATCACAAGACGCAGCTGTTGGTGTTCTTGTTCACATGCTAAGGACAGCACCCCCACTTCGTCAAGATTCAAGTTGTTTCACATCCCAATGCTTAAAAACCGACACTGATGAGGAAGCTGCTACAGCTTCCGGATTCTTCATGCCTCGAAAAGCAGCAGATGCACTTGAAGAGCTCAGGAGCTACCGGGAAATGAAAGACCTTCTGCTCTCTAAAAGTGGGACCCGGGTTCTCAACCGAGAAGAAGATTGA 1839 41.82 MDMESNSLNEPKKLEQIVSQFLLKCLHVILDSRIPSLHSHDNSGDLSSQPRVRKSDKWFNLALGDRPAALNNLNFWHRNVMDPMIIDIILVHNQPDSSTAALPGSSSSIETVIERWVVQYKSPHTFSPQSGESFLSYKKTYQKSIILLRSLFTRMRLLPAYRIFRQLSTSSQTYDFDIIYKVSSFSDPFSIVEEEMVKDHSFSSIEAPPGRLSVSLAYRPTLADFNLECSTSLPPMIIMDYVGSPTTDPLRFFPSTEKGVCATSFPLRGQQSPTSGPFQRPHSWTSGFQRAATFAENRVYYGSPPASRKSSMPYDFPSPSSDLYGNRGQNVRPLAYLHSQTNINDEYQLSPPFSSSPSPSPSPPTYFASGMKSRMHSQTSPVSIPIQMGKSSRYVSPNFSDPNRHSLPPLSPRSIKNDNSSHESPSGIRSYRKEILRSGEFQSGMANHYSSPKVARDSKDESGRFSGLLSSSGSPRIGFSRSSSRLSFQDDTDDGDFSCPFDFDDVETPDFLLRKRTSEFTSQSLPLGTKSQDAAVGVLVHMLRTAPPLRQDSSCFTSQCLKTDTDEEAATASGFFMPRKAADALEELRSYREMKDLLLSKSGTRVLNREED 612
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3241353 3243832 + Conep05aG0078100.1 Cone5ag0756 437774

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0756 612 Gene3D HORMA domain 3 228 IPR036570 -
Cone5ag0756 612 MobiDBLite consensus disorder prediction 345 428 - -
Cone5ag0756 612 MobiDBLite consensus disorder prediction 313 328 - -
Cone5ag0756 612 MobiDBLite consensus disorder prediction 442 486 - -
Cone5ag0756 612 MobiDBLite consensus disorder prediction 464 486 - -
Cone5ag0756 612 PANTHER UNCHARACTERIZED 2 603 IPR040182 GO:0000045(InterPro)|GO:0000407(PANTHER)|GO:0000423(PANTHER)|GO:0005829(PANTHER)|GO:0034497(PANTHER)|GO:0034727(PANTHER)|GO:1990316(PANTHER)
Cone5ag0756 612 MobiDBLite consensus disorder prediction 305 328 - -
Cone5ag0756 612 Pfam Autophagy-related protein 13 18 221 IPR018731 GO:0006914(InterPro)|GO:1990316(InterPro)
Cone5ag0756 612 MobiDBLite consensus disorder prediction 365 426 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0756 K08331 - - mdm:103444528 783.097
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0040 Cone-Chr12:249220 Cone5ag0756 Cone-Chr5:3241353 1.01E-78 dispersed
Cone5ag0756 Cone-Chr5:3241353 Cone8ag0042 Cone-Chr8:233942 8.58E-83 dispersed
Cone1ag1046 Cone-Chr1:55212696 Cone5ag0756 Cone-Chr5:3241353 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g930 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone1ag1046 Cone5ag0756 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0023663 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 2