Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0766 ATGCTCGAGTTTCCAACTTTTGAAGGTGCAACAATGGGTGAAAATAGTTTTCCTCCTATCCATAAGCAAAGCTCAAGCCATGGACCAAATCTCATGCCCTGCTTAACGGAACAGTGGGGTGACTTGCCCTTCAAATTTGACGACCCGGACGACATGATCGTCTACAACTCTCTCAACGACGCTGTTTCCTTCGGTTGGTCTCCGTCAGATTTATCCGCCACAACTGTCAGAGCTGAGCCGGAAGCTGAGTCGATGCTTTTGTTGGCTGATGGTCAGAAACCAGCTGCTCGCAAGTTTTTTGAAGAGAAGCGGAGTGGAGGAGGGGGAGGCGGAGGAGGAAGGCATTTTAGAGGGGTGAGAAAGCGACCATGGGGAAAGTACGCGGCTGAGATTAGAGACCCGGCAAAGAACGGCGCAAGGGTATGGCTTGGGACGTATGAGACGGCCGAGGAAGCAGCTTTGGCTTATGATCGAGCGGCTTACAGAATTCGCGGCTCAAAAGCTTTACTTAATTTTCCACACCGCATCGGCACAGGGGAGCCATCGCAGCCTGTAAGAGTCGGGGCCAAGCGGCGGGAGGCAGAGCCAGCTTTATCTAAAGGGTTGGATTATGGCTCCGATAAGAGGAGAAAACTCCTGGCGGCTAACGAAGCCGGATAA 660 52.42 MLEFPTFEGATMGENSFPPIHKQSSSHGPNLMPCLTEQWGDLPFKFDDPDDMIVYNSLNDAVSFGWSPSDLSATTVRAEPEAESMLLLADGQKPAARKFFEEKRSGGGGGGGGRHFRGVRKRPWGKYAAEIRDPAKNGARVWLGTYETAEEAALAYDRAAYRIRGSKALLNFPHRIGTGEPSQPVRVGAKRREAEPALSKGLDYGSDKRRKLLAANEAG 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3283128 3284241 - Conep05aG0079100.1 Cone5ag0766 437784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0766 219 PANTHER DNA-BINDING DOMAIN 81 184 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Cone5ag0766 219 FunFam Ethylene-responsive transcription factor 2 114 174 - -
Cone5ag0766 219 CDD AP2 115 174 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag0766 219 MobiDBLite consensus disorder prediction 186 203 - -
Cone5ag0766 219 Pfam AP2 domain 115 165 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag0766 219 Gene3D AP2/ERF domain 114 175 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag0766 219 PRINTS Ethylene responsive element binding protein signature 116 127 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag0766 219 PRINTS Ethylene responsive element binding protein signature 139 155 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag0766 219 MobiDBLite consensus disorder prediction 174 203 - -
Cone5ag0766 219 ProSiteProfiles AP2/ERF domain profile. 115 173 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag0766 219 SMART rav1_2 115 179 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag0766 219 SUPERFAMILY DNA-binding domain 115 175 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag0766 Cone-Chr5:3283128 Cone6ag0649 Cone-Chr6:3279735 5.53E-54 dispersed
Cone12ag0404 Cone-Chr12:2370752 Cone5ag0766 Cone-Chr5:3283128 5.85E-26 wgd
Cone14ag0493 Cone-Chr14:2425752 Cone5ag0766 Cone-Chr5:3283128 3.29E-30 wgd
Cone15ag0522 Cone-Chr15:2553295 Cone5ag0766 Cone-Chr5:3283128 1.45E-27 wgd
Cone5ag0766 Cone-Chr5:3283128 Cone8ag0420 Cone-Chr8:2610186 4.64E-28 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46150 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0766 K09286 - sly:544041 196.438