Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone5ag0766 | ATGCTCGAGTTTCCAACTTTTGAAGGTGCAACAATGGGTGAAAATAGTTTTCCTCCTATCCATAAGCAAAGCTCAAGCCATGGACCAAATCTCATGCCCTGCTTAACGGAACAGTGGGGTGACTTGCCCTTCAAATTTGACGACCCGGACGACATGATCGTCTACAACTCTCTCAACGACGCTGTTTCCTTCGGTTGGTCTCCGTCAGATTTATCCGCCACAACTGTCAGAGCTGAGCCGGAAGCTGAGTCGATGCTTTTGTTGGCTGATGGTCAGAAACCAGCTGCTCGCAAGTTTTTTGAAGAGAAGCGGAGTGGAGGAGGGGGAGGCGGAGGAGGAAGGCATTTTAGAGGGGTGAGAAAGCGACCATGGGGAAAGTACGCGGCTGAGATTAGAGACCCGGCAAAGAACGGCGCAAGGGTATGGCTTGGGACGTATGAGACGGCCGAGGAAGCAGCTTTGGCTTATGATCGAGCGGCTTACAGAATTCGCGGCTCAAAAGCTTTACTTAATTTTCCACACCGCATCGGCACAGGGGAGCCATCGCAGCCTGTAAGAGTCGGGGCCAAGCGGCGGGAGGCAGAGCCAGCTTTATCTAAAGGGTTGGATTATGGCTCCGATAAGAGGAGAAAACTCCTGGCGGCTAACGAAGCCGGATAA | 660 | 52.42 | MLEFPTFEGATMGENSFPPIHKQSSSHGPNLMPCLTEQWGDLPFKFDDPDDMIVYNSLNDAVSFGWSPSDLSATTVRAEPEAESMLLLADGQKPAARKFFEEKRSGGGGGGGGRHFRGVRKRPWGKYAAEIRDPAKNGARVWLGTYETAEEAALAYDRAAYRIRGSKALLNFPHRIGTGEPSQPVRVGAKRREAEPALSKGLDYGSDKRRKLLAANEAG | 219 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 3283128 | 3284241 | - | Conep05aG0079100.1 | Cone5ag0766 | 437784 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone5ag0766 | 219 | PANTHER | DNA-BINDING DOMAIN | 81 | 184 | IPR044808 | GO:0003700(InterPro)|GO:0009873(InterPro) | |
Cone5ag0766 | 219 | FunFam | Ethylene-responsive transcription factor 2 | 114 | 174 | - | - | |
Cone5ag0766 | 219 | CDD | AP2 | 115 | 174 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone5ag0766 | 219 | MobiDBLite | consensus disorder prediction | 186 | 203 | - | - | |
Cone5ag0766 | 219 | Pfam | AP2 domain | 115 | 165 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone5ag0766 | 219 | Gene3D | AP2/ERF domain | 114 | 175 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone5ag0766 | 219 | PRINTS | Ethylene responsive element binding protein signature | 116 | 127 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone5ag0766 | 219 | PRINTS | Ethylene responsive element binding protein signature | 139 | 155 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone5ag0766 | 219 | MobiDBLite | consensus disorder prediction | 174 | 203 | - | - | |
Cone5ag0766 | 219 | ProSiteProfiles | AP2/ERF domain profile. | 115 | 173 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone5ag0766 | 219 | SMART | rav1_2 | 115 | 179 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone5ag0766 | 219 | SUPERFAMILY | DNA-binding domain | 115 | 175 | IPR016177 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone5ag0766 | Cone-Chr5:3283128 | Cone6ag0649 | Cone-Chr6:3279735 | 5.53E-54 | dispersed | |
Cone12ag0404 | Cone-Chr12:2370752 | Cone5ag0766 | Cone-Chr5:3283128 | 5.85E-26 | wgd | |
Cone14ag0493 | Cone-Chr14:2425752 | Cone5ag0766 | Cone-Chr5:3283128 | 3.29E-30 | wgd | |
Cone15ag0522 | Cone-Chr15:2553295 | Cone5ag0766 | Cone-Chr5:3283128 | 1.45E-27 | wgd | |
Cone5ag0766 | Cone-Chr5:3283128 | Cone8ag0420 | Cone-Chr8:2610186 | 4.64E-28 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
46150 | None | None | None | None | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone5ag0766 | K09286 | - | sly:544041 | 196.438 |