Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0784 ATGAAAAAACTCTCTTTCACTTTCTTTCCCACCCTCTTCTTCTTCTTCTTCTTCATCTTCTTCTTCCTTCAAACGATGACACAAGTTCTCTCTGCTACAACTCTTCCACTCCAACTTTTCGCCCTTCGTTCTATAAAATTGTCACTAAGTGATCCACTCTTTACGTTCCATGACTGGAATACTGTACCCACCTTTTCCAAGTCTGAATTCCAAGAACCAGTTTGGTGTTCATGGTCAGGCATTAAATGCCATCCAAACAGAGCTCAAGTCACTACTCTGGACCTATCTCACCGCAATCTTTCCGGCAGAATCCCGGCTGAGATCAAGTACCTGACAAGCTTAGTCCACTTGAATTTAAGTGGAAATAACTTTGATGGACCTTTTCAAGCAGCCATTTTTGAGCTCAATGAGCTTAGAGCACTTGATATCAGCCATAATAACTTCAATTCCACACTCCCACCGGGAATTTCCAAGCTCCAATTCTTACGGTTTTTCAGTGCTTACAGCAACAGCTTTACAGGCTCATTGCCATTAGAACTTGTCCGGCTTCGATATCTAGAGCATCTCAACCTCGGCGGAAGCTACTTTGGAGGTGTCATCCCCAAAAGCTATGGGAGTTTTTCAAGATTGAAGTTTTTGGACTTAGCTGGTAATGTATTAGAAGGAGCAATACCAAACCAACTCTCCTTCTTGACACAGCTAGAACGAATGGAAATCGGCTATAACGAGTTTTCAGGTGGGATACCTTCAGAATTCTCATTATTGGTGAATTTGAAATACTTGGATATGGCACAGGCTAATCTTTCAGGCAGTTTACCTGAAGAACTTGGAAACTTGAAGATGTTAGAGATGTTTTTTCTTTTTAAAAACCGCTTCACGGGAAAAATTCCGGAAAGTTTTGGGAACTTGGAAGCTCTTCAGATACTTGATTTATCTGATAATCAACTTTCCGGAACGATTCCGAGAGAACTGGTTAAACTAAAAGAACTAACACGCTTGAGCTTGATGAGCAACAATCTGAGTGGGGAAATTCCACAAACACTTGATGCGCTTCCAAACCTTGACACCTTATTGATCTGGAACAATTCCTTTACCGGAATTTTGCCCCAAAGTCTTGGGATGAACAAGAATTTAATGGTACTGGATGTGTCTTCCAATTCTCTTACCGGTCCAATTCCGCCAAATCTTTGCCAAGGAAACAAACTTTACAAGCTGATTCTCTTCTCGAATAGGTTCGTCAATGAGATTCCGAGCTCTTTAGCAAACTGCACTTCTTTATCACGCTTCCGCATCCAGAACAACTATCTCAATGGCTCGATTCCTTACGGTTTCGGTCTCTTACAAAACCTTTCGTTCGTCGATATGAGCAACAACAATCTCTCAGGCGAAATTCCTGACGATCTTGGTAATGCAGTTAGCTTAGCGCACTTGAACATCTCGCAAAATTCTTTCAAATCCACTTTTCCTGATAACATCTGGAACTCTTCGAGCTTACAGATCTTCTCAGCTAGCTCAGCTCAAATTGTCGGTAAGATTCCAGATATCGTCGGATGCAAAAGCGTGTACAAAGTCGAACTTCAAGACAATCTCTTAAACAGCACCATTCCATGGAGTATCGGACATTGTGAGAAACTGATCAGTTTGAACTTGAGCCGGAATTCGCTTACCGGCATTATTCCTTGGGAGATTTCTACGCTACCGTCGGTCACCGCCATTGATCTCTCACATAACTTACTCACCGGAACTATTCCTTCAAATTTTCAAAACTGCAGCACACTTGAAATCTTTAACGTTTCTTACAACAAGCTTACCGGTCCAATTCCATCTACCGGCACAATTTTCCCTAGTTTACATCCGTCGTCATTTTCCGGAAACGACGGACTATGCGGTGACATTTTAGCGAAACCGTGCGCAGACGACACGCTTGCCGCCGGCGCCATGGAAGTCCGGCAGAGGCAGCCACGGCGGGCCGCGGGAACTATAGTTTGGATCATAGCAGCAGCCTTTGGAATCGGGATGTTTGTGCTAGTGGCGGGAACCCGATGCTTTCAAGCGAACTACAGCCGTCGATACGGAACCGAGCAGGAAATCGGACCGTGGAAATTAACGGCATTTCAGCGGCTAAATTTCTCGGCAGATGATGTGTTAGAGTGTTTGTCAACGACCGATAAGATCTTAGGAATGGGGTCCGCAGGGACGGTATACAAAGCAGAGATGCCAAGTGGCGAGATCATAGCGGTGAAGAAGCTGTGGGGCAAACATAAAGAAAGGATCCGACGGCGAAAAGGGGTCTTAGCCGAAGTGGAAGTACTGGGTAGGGTGAGGCACAGGAACATCGTAAGGCTGTTTGGATACTGTAGCAACGGAGAGTGCACCATGCTGTTGTACGAGTACATGCCGAACGGTAACTTGGAAGATCTACTGCACGGTAAAAACAAAGGTGAAAATCTAGTAGCGGATTGGTTAACAAGGTATAAGATCGCATTAGGTGTGGCTCAGGGGATATGCTATCTTCACCACGACTGTGATCCAGTGATCGTGCATCGTGATCTCAAGCCTAGTAATATACTGTTGGACGGTGAGATGGAGGCCAGGGTGGCAGATTTTGGGGTGGCTAAGCTCATCCAGCACGATGAGTCGATGTCAGTCATTGCTGGGTCCTACGGTTACATAGCGCCAGAATATGCATATACCTTACAAGTTGACGAGAAGAGTGATATTTACAGCTTCGGGGTGGTGTTAATGGAGATCTTAACGGGTAGAAGATCGGTTGATTCGGACTTTGGTGAGGGTAACAGTGTTGTAGATTGGGTGAGGTCGAAGATTAAGATTAAGGACGGAGCTAACGACGTTTTGGACAAGAATGCAGGGGCCTCTTGTTTGCCTGTAAGACATGAAATGATGCAGATGCTGAAAATTGCATTGCTTTGTACGAGCCGTAACCCAACGGAACGCCCCACCATGCGTGACGTGGTCATGATGTTGCAAGAGGCAAAGCCTAAAAGGAAGTTTTCCGATAGTATGATAGGAGGAGGAGGCGGAGGCGGTAGTGGGGATGAGATTAGTGGTGTAATTAGTGGTCAGGTCGATGGTAAGGGGGGTGATCATATTCTCTCAGTTCAAAAGTCAGTAGTAGAGTATTAA 3144 44.97 MKKLSFTFFPTLFFFFFFIFFFLQTMTQVLSATTLPLQLFALRSIKLSLSDPLFTFHDWNTVPTFSKSEFQEPVWCSWSGIKCHPNRAQVTTLDLSHRNLSGRIPAEIKYLTSLVHLNLSGNNFDGPFQAAIFELNELRALDISHNNFNSTLPPGISKLQFLRFFSAYSNSFTGSLPLELVRLRYLEHLNLGGSYFGGVIPKSYGSFSRLKFLDLAGNVLEGAIPNQLSFLTQLERMEIGYNEFSGGIPSEFSLLVNLKYLDMAQANLSGSLPEELGNLKMLEMFFLFKNRFTGKIPESFGNLEALQILDLSDNQLSGTIPRELVKLKELTRLSLMSNNLSGEIPQTLDALPNLDTLLIWNNSFTGILPQSLGMNKNLMVLDVSSNSLTGPIPPNLCQGNKLYKLILFSNRFVNEIPSSLANCTSLSRFRIQNNYLNGSIPYGFGLLQNLSFVDMSNNNLSGEIPDDLGNAVSLAHLNISQNSFKSTFPDNIWNSSSLQIFSASSAQIVGKIPDIVGCKSVYKVELQDNLLNSTIPWSIGHCEKLISLNLSRNSLTGIIPWEISTLPSVTAIDLSHNLLTGTIPSNFQNCSTLEIFNVSYNKLTGPIPSTGTIFPSLHPSSFSGNDGLCGDILAKPCADDTLAAGAMEVRQRQPRRAAGTIVWIIAAAFGIGMFVLVAGTRCFQANYSRRYGTEQEIGPWKLTAFQRLNFSADDVLECLSTTDKILGMGSAGTVYKAEMPSGEIIAVKKLWGKHKERIRRRKGVLAEVEVLGRVRHRNIVRLFGYCSNGECTMLLYEYMPNGNLEDLLHGKNKGENLVADWLTRYKIALGVAQGICYLHHDCDPVIVHRDLKPSNILLDGEMEARVADFGVAKLIQHDESMSVIAGSYGYIAPEYAYTLQVDEKSDIYSFGVVLMEILTGRRSVDSDFGEGNSVVDWVRSKIKIKDGANDVLDKNAGASCLPVRHEMMQMLKIALLCTSRNPTERPTMRDVVMMLQEAKPKRKFSDSMIGGGGGGGSGDEISGVISGQVDGKGGDHILSVQKSVVEY 1047
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3359258 3363165 + Conep05aG0080900.1 Cone5ag0784 437802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0784 1047 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 688 798 - -
Cone5ag0784 1047 FunFam LRR receptor-like serine/threonine-protein kinase EFR 348 643 - -
Cone5ag0784 1047 Pfam Leucine rich repeat 520 579 IPR001611 GO:0005515(InterPro)
Cone5ag0784 1047 Pfam Leucine rich repeat 290 340 IPR001611 GO:0005515(InterPro)
Cone5ag0784 1047 Pfam Leucine rich repeat 352 412 IPR001611 GO:0005515(InterPro)
Cone5ag0784 1047 Pfam Leucine Rich Repeat 449 470 IPR001611 GO:0005515(InterPro)
Cone5ag0784 1047 Pfam Leucine Rich Repeat 138 159 IPR001611 GO:0005515(InterPro)
Cone5ag0784 1047 Pfam Leucine Rich Repeat 257 279 IPR001611 GO:0005515(InterPro)
Cone5ag0784 1047 SUPERFAMILY Protein kinase-like (PK-like) 723 995 IPR011009 -
Cone5ag0784 1047 Gene3D Ribonuclease Inhibitor 395 637 IPR032675 -
Cone5ag0784 1047 ProSitePatterns Serine/Threonine protein kinases active-site signature. 846 858 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone5ag0784 1047 Gene3D Transferase(Phosphotransferase) domain 1 799 1009 - -
Cone5ag0784 1047 SUPERFAMILY L domain-like 48 392 - -
Cone5ag0784 1047 FunFam Leucine-rich repeat receptor-like protein kinase 202 290 - -
Cone5ag0784 1047 SMART serkin_6 720 999 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag0784 1047 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 18 998 IPR050647 -
Cone5ag0784 1047 SMART LRR_typ_2 111 130 IPR003591 -
Cone5ag0784 1047 SMART LRR_typ_2 255 279 IPR003591 -
Cone5ag0784 1047 SMART LRR_typ_2 351 374 IPR003591 -
Cone5ag0784 1047 SMART LRR_typ_2 566 589 IPR003591 -
Cone5ag0784 1047 SMART LRR_typ_2 303 327 IPR003591 -
Cone5ag0784 1047 SMART LRR_typ_2 376 399 IPR003591 -
Cone5ag0784 1047 SMART LRR_typ_2 447 471 IPR003591 -
Cone5ag0784 1047 SMART LRR_typ_2 135 159 IPR003591 -
Cone5ag0784 1047 MobiDBLite consensus disorder prediction 1004 1023 - -
Cone5ag0784 1047 Gene3D Ribonuclease Inhibitor 193 294 IPR032675 -
Cone5ag0784 1047 Pfam Protein kinase domain 722 992 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag0784 1047 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 291 347 - -
Cone5ag0784 1047 Gene3D Phosphorylase Kinase; domain 1 700 798 - -
Cone5ag0784 1047 SUPERFAMILY RNI-like 288 628 - -
Cone5ag0784 1047 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 85 176 - -
Cone5ag0784 1047 FunFam leucine-rich repeat receptor-like protein kinase TDR 799 1007 - -
Cone5ag0784 1047 Gene3D Ribonuclease Inhibitor 295 394 IPR032675 -
Cone5ag0784 1047 ProSiteProfiles Protein kinase domain profile. 720 1005 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag0784 1047 Gene3D Ribonuclease Inhibitor 38 192 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0443 Cone-Chr16:6768456 Cone5ag0784 Cone-Chr5:3359258 8.23E-37 dispersed
Cone20ag1383 Cone-Chr20:8824539 Cone5ag0784 Cone-Chr5:3359258 3.93E-39 dispersed
Cone4ag1464 Cone-Chr4:11559360 Cone5ag0784 Cone-Chr5:3359258 2.87E-73 dispersed
Cone5ag0784 Cone-Chr5:3359258 Cone6ag1494 Cone-Chr6:11836339 1.62E-96 dispersed
Cone5ag0784 Cone-Chr5:3359258 Cone5ag0791 Cone-Chr5:3391465 2.02E-52 proximal
Cone1ag1071 Cone-Chr1:55317892 Cone5ag0784 Cone-Chr5:3359258 1.37E-302 wgd
Cone14ag0499 Cone-Chr14:2447965 Cone5ag0784 Cone-Chr5:3359258 1.77E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82846 PF00190 Cupin_1 7.40E-47 CL0029 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0784 - - - 0.0