Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0802 ATGGCAAACAATCTTGCAGTATTCTCCCTTTTGTTTGCTTCATTCTTTTCACTTTTTTCACTCACCCTCTCAAGCCATGATTCTAATGGCTCCATAGATTGGTGGTGCGAAAAAACCCGGTACCCCGACACTTGCAAATACTTCCTTGATAACCATGGCGACAAATTTTCACGAAAGCACAAATCCGAGTTCAAAAAACTAGTGCTCGAAATTGCCGTGGAAAGAGCTCAGAGGGCTCACACCAACACAAAATGGGCCGGTTCAAAATGCCAAAATGAAAAAGAAAAAGCCGCATGGACCGATTGCTTGGAGCTATACGAAAACACCATCTTCCAACTAAACCAGACATTAGACCAAACCACCAAATGCACTGGTGAGGACGTCCAAACCTGGCTCAGCACTGCCTTGACCAACCTCGAAACATGTCGGGCAGGGTTCAATGATCTAAATGTCTCGAACTATATGTTGCCATTGATCATGTCGAACAATGTTTCGAAGCTTATCTGTAATGGTTTAGCTATTAATTACAACGATTCACTTAATAGCAGTATTGGTTCTTTACCTAATTATAAAGAGGATTTTCCCAGTTGGGTTTCGGGTGGAGACAGGAAGTTGTTGCAATCATCATCTCCCAAGGCAAATCTTGTGGTGGCCCAAGATGGATCCGGGAATTATAGGTCCGTTCAGGCGGCAGTGAATGTGGCCGAGAAGAGGAGTGGGAGTGGGAGGTTTATTATATATGTGAAGAGAGGGACTTATAAAGAGAATGTGGTGATAAAGTCGAAAAACATAATGCTTGTTGGTGATGGATTGAGGTATACTATCATAACTGGGAGTAGGAGTGTCGTCGGTGGTTCTACAACTTTCAATTCTGCAACTGTTGCGGTGACCGGAGGAGGATTTATAGCCCGCGGTATCACTTTTCGTAATACTGCGGGTCCTCAAAACCACCAAGCTGTCGCTCTCCGATCAGGTGCCGATCTCTCAGTCTTCTATCGATGCGGTTTTGAGGGATACCAAGACACTTTATACGTCCACTCACAAAGACAATTCTATAAAGAATGTTACATTTACGGCACAGTAGACTTTATCTTCGGAAACTCAGCAGTTGTGTTACAAAACTGCATGATTTATGCTCGTAAACCTAGCTCTGGTCAGAAAAACACTATTACAGCACAAGGCCGAATTGACCCTAACCAGAACACAGGGATTTCGATTCATAATTCTAGAGTTATGGCAACCTCGGATCTTAGACGCGTGCAAGGCACGGTTTCGACCTACTTGGGAAGGCCATGGAAGACTTACTCACGGACCGTTTTCTTGCAAACTTACCTTGATAGCTTGGTTAACCCAGCAGGTTGGTTGGAATGGGATGGTGATTTTGCACTAAGTACTTTGTATTATGGGGAGTATAAGAACATGGGACCTGGTTCGTCAACTAGCCGGAGAGTGAAGTGGAAGGGTTACCGTGTTATAACTAGCGCAACCGAAGCATCAAAGTTCACTGTTCAAAATTTCATTGCCGGGAAGTCATGGTTACCGGGTACTGGGGTGCCTTTTACTTCCGATCTGTGA 1575 44.32 MANNLAVFSLLFASFFSLFSLTLSSHDSNGSIDWWCEKTRYPDTCKYFLDNHGDKFSRKHKSEFKKLVLEIAVERAQRAHTNTKWAGSKCQNEKEKAAWTDCLELYENTIFQLNQTLDQTTKCTGEDVQTWLSTALTNLETCRAGFNDLNVSNYMLPLIMSNNVSKLICNGLAINYNDSLNSSIGSLPNYKEDFPSWVSGGDRKLLQSSSPKANLVVAQDGSGNYRSVQAAVNVAEKRSGSGRFIIYVKRGTYKENVVIKSKNIMLVGDGLRYTIITGSRSVVGGSTTFNSATVAVTGGGFIARGITFRNTAGPQNHQAVALRSGADLSVFYRCGFEGYQDTLYVHSQRQFYKECYIYGTVDFIFGNSAVVLQNCMIYARKPSSGQKNTITAQGRIDPNQNTGISIHNSRVMATSDLRRVQGTVSTYLGRPWKTYSRTVFLQTYLDSLVNPAGWLEWDGDFALSTLYYGEYKNMGPGSSTSRRVKWKGYRVITSATEASKFTVQNFIAGKSWLPGTGVPFTSDL 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3450694 3452956 + Conep05aG0082700.1 Cone5ag0802 437820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0802 524 PANTHER PECTINESTERASE 15 514 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cone5ag0802 524 NCBIfam pectinesterase inhibitor domain 6 176 IPR006501 GO:0004857(InterPro)
Cone5ag0802 524 ProSitePatterns Pectinesterase signature 2. 357 366 IPR033131 -
Cone5ag0802 524 SUPERFAMILY Pectin lyase-like 209 522 IPR011050 -
Cone5ag0802 524 FunFam Pectinesterase 208 524 - -
Cone5ag0802 524 Gene3D Invertase/pectin methylesterase inhibitor family protein 28 177 IPR035513 -
Cone5ag0802 524 SMART PMEI_2 27 174 IPR006501 GO:0004857(InterPro)
Cone5ag0802 524 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 30 175 IPR035513 -
Cone5ag0802 524 Pfam Pectinesterase 214 509 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cone5ag0802 524 Gene3D - 208 524 IPR012334 -
Cone5ag0802 524 CDD PMEI-like_3 34 177 - -
Cone5ag0802 524 Pfam Plant invertase/pectin methylesterase inhibitor 31 174 IPR006501 GO:0004857(InterPro)
Cone5ag0802 524 ProSitePatterns Pectinesterase signature 1. 240 259 IPR018040 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1095 Cone-Chr1:55447486 Cone5ag0802 Cone-Chr5:3450694 1.81E-230 dispersed
Cone4ag0484 Cone-Chr4:2157022 Cone5ag0802 Cone-Chr5:3450694 6.87E-227 dispersed
Cone4ag0485 Cone-Chr4:2163415 Cone5ag0802 Cone-Chr5:3450694 5.14E-229 dispersed
Cone4ag0890 Cone-Chr4:6423977 Cone5ag0802 Cone-Chr5:3450694 1.12E-120 dispersed
Cone5ag0802 Cone-Chr5:3450694 Cone6ag0294 Cone-Chr6:1354882 2.49E-180 dispersed
Cone9ag0017 Cone-Chr9:94586 Cone5ag0802 Cone-Chr5:3450694 7.31E-37 dispersed
Cone5ag0802 Cone-Chr5:3450694 Cone5ag0803 Cone-Chr5:3453279 5.93E-202 tandem
Cone1ag1094 Cone-Chr1:55447008 Cone5ag0802 Cone-Chr5:3450694 9.26E-65 wgd
Cone12ag0384 Cone-Chr12:2206079 Cone5ag0802 Cone-Chr5:3450694 4.43E-43 wgd
Cone13ag1236 Cone-Chr13:9458454 Cone5ag0802 Cone-Chr5:3450694 3.71E-43 wgd
Cone5ag0802 Cone-Chr5:3450694 Cone8ag0400 Cone-Chr8:2461221 1.36E-43 wgd
Cone5ag0802 Cone-Chr5:3450694 Cone9ag0701 Cone-Chr9:3376043 3.76E-06 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0802 K01051 - csv:101211449 758.444