Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone5ag0803 | ATGAGTATCGTTAAAACCAACTTGCTCCTCCTCATATTCGTAGCTTGCTTCTTCTCAATCTTGTTACCGGCCGACTCAAGAAGCACGGAATATAAACGCAACATAGAAAAATGGTGCGCCACCACCCCACATCCCGAATCGTGCAAATACTTCATCTCTCACACTCACTCCCACCACAAGTTCAACCCGAAACACCGGTCTGAGTTCCGAAAGATATCGGTTCGAATCTCGTTAGAACGAGCCGTTGATGCCCTCAAATTCACGATGAAATTCGGCCCAAACAAGAACAACGCCCGCCAGGTAGCCGCCTGGTCGGACTGCTTAAAGCTCTACCGCAACACAGTTCTCCAGTTAAATCGAACCCTTCAAGGCTTAACCAATTACAGAAACTTGTCTTGCACGAATTTCGATGCGCAGACATGGCTTAGCACTGCTCTCACGAACATTGCAACATGCCGTACAAGTGGTGCGGATTTAAACGTTACGCATTTTATTGACCCCATCACGACATCAAACAACGTGTCGGAGCTTATTAGCAACAGTTTGGCAGTTAATGGCTTTATGCTAGGGGAAACGAGTAATTATACAGCTAATGAGGCCAGTAGAGTAGGCATGGAGGAGTACTTTCCGGTATGGGTTTCTAAGGGCGAGACGAAGTTGCTGCAGAGTTCGACCGTGAAGGCGGATGTGGTGGTGGCGAAAGATGGATCGGGGAATTACAAGACGGTCCAGGCGGCAATCGATGCGGCGGCGAGGAGGAAAGGGAGAGGGAAGTTTGTTATTTACATAAAGAGAGGCGTTTATAAGGAAAATATTGAGGTCGGGAACAATAATATTAAGGTTGTCATGATTGGGGATGGAATGAAGTATACTATAATCACTAGTAGTAGGAGTGTTGGAGGGGGTTACACCACCTATAGTTCTGCTACTGCTGGCATAGACGGAGTAGGATTTGTGGCCCGAGGCATTACGTTCATGAACACGGCCGGTCCAAAAATGGGTCAAGCCGTGGCACTCCGATCATCGTCCGATCTTTCAGTATTTTACAAATGTGCCTTCCATGGTTACCAAGACACCCTGATGGTCCTTTCACAGAGACAGTTCTATAGAGAATGCTACATCTATGGCACTATTGACTTCATATTTGGTAATGCAGCAGTTGTTTTCCAAAACTGCCTCATCTATGTAAAAAGGCCGTTAAAGGGCCAAGTTAACGTCATCACGGCCCAAGGTCGTGATGACCCATATCAAAATACAGGGATTTCTCTCCACGGTTGTCAGGTCCGAGCTGCACCGGACCTGAAGCCAGTGATGGGCTCGTTCAAGACTTACTTGGGCCGGCCTTGGAGACAATACTCTAGAACTGTCGTACTTAAAAGTTATATTGATAGCGTGGTGAGTCCAGTGGGCTGGTTACCATGGGACAAAAGCTCGTATGCTCTCGATACTTTGTATTATGGGGAGTACCAAAACTTTGGGCCTAGGGCCTCGACGAAGTACAGAGTGAGGTGGAAGGGGTTTCATGTGATCACAAGCCCAACAGTTGCAGCTAGTTTTACGGTGGCCCGGCTTATTGCGGGCCAGTCTTGGTTGCCAGGTACTGGAGTGCCATTCAGGCCCAATTTGTGA | 1629 | 47.76 | MSIVKTNLLLLIFVACFFSILLPADSRSTEYKRNIEKWCATTPHPESCKYFISHTHSHHKFNPKHRSEFRKISVRISLERAVDALKFTMKFGPNKNNARQVAAWSDCLKLYRNTVLQLNRTLQGLTNYRNLSCTNFDAQTWLSTALTNIATCRTSGADLNVTHFIDPITTSNNVSELISNSLAVNGFMLGETSNYTANEASRVGMEEYFPVWVSKGETKLLQSSTVKADVVVAKDGSGNYKTVQAAIDAAARRKGRGKFVIYIKRGVYKENIEVGNNNIKVVMIGDGMKYTIITSSRSVGGGYTTYSSATAGIDGVGFVARGITFMNTAGPKMGQAVALRSSSDLSVFYKCAFHGYQDTLMVLSQRQFYRECYIYGTIDFIFGNAAVVFQNCLIYVKRPLKGQVNVITAQGRDDPYQNTGISLHGCQVRAAPDLKPVMGSFKTYLGRPWRQYSRTVVLKSYIDSVVSPVGWLPWDKSSYALDTLYYGEYQNFGPRASTKYRVRWKGFHVITSPTVAASFTVARLIAGQSWLPGTGVPFRPNL | 542 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 3453279 | 3455144 | - | Conep05aG0082800.1 | Cone5ag0803 | 437821 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone5ag0803 | 542 | Gene3D | - | 222 | 542 | IPR012334 | - | |
| Cone5ag0803 | 542 | ProSitePatterns | Pectinesterase signature 2. | 374 | 383 | IPR033131 | - | |
| Cone5ag0803 | 542 | CDD | PMEI-like_3 | 38 | 185 | - | - | |
| Cone5ag0803 | 542 | ProSitePatterns | Pectinesterase signature 1. | 255 | 274 | IPR018040 | - | |
| Cone5ag0803 | 542 | SUPERFAMILY | Plant invertase/pectin methylesterase inhibitor | 34 | 188 | IPR035513 | - | |
| Cone5ag0803 | 542 | SUPERFAMILY | Pectin lyase-like | 224 | 539 | IPR011050 | - | |
| Cone5ag0803 | 542 | FunFam | Pectinesterase | 223 | 542 | - | - | |
| Cone5ag0803 | 542 | Pfam | Plant invertase/pectin methylesterase inhibitor | 34 | 184 | IPR006501 | GO:0004857(InterPro) | |
| Cone5ag0803 | 542 | Pfam | Pectinesterase | 229 | 527 | IPR000070 | GO:0030599(InterPro)|GO:0042545(InterPro) | |
| Cone5ag0803 | 542 | PANTHER | PECTINESTERASE | 9 | 532 | - | GO:0030599(PANTHER)|GO:0046910(PANTHER) | |
| Cone5ag0803 | 542 | ProSiteProfiles | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 16 | - | - | |
| Cone5ag0803 | 542 | SMART | PMEI_2 | 30 | 184 | IPR006501 | GO:0004857(InterPro) | |
| Cone5ag0803 | 542 | NCBIfam | pectinesterase inhibitor domain | 8 | 185 | IPR006501 | GO:0004857(InterPro) | |
| Cone5ag0803 | 542 | Gene3D | Invertase/pectin methylesterase inhibitor family protein | 31 | 188 | IPR035513 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone1ag1096 | Cone-Chr1:55449667 | Cone5ag0803 | Cone-Chr5:3453279 | 0 | dispersed | |
| Cone5ag0803 | Cone-Chr5:3453279 | Cone6ag0383 | Cone-Chr6:1864724 | 3.40E-154 | dispersed | |
| Cone5ag0802 | Cone-Chr5:3450694 | Cone5ag0803 | Cone-Chr5:3453279 | 5.93E-202 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone5ag0803 | K01051 | - | mdm:103417824 | 694.501 |