Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0803 ATGAGTATCGTTAAAACCAACTTGCTCCTCCTCATATTCGTAGCTTGCTTCTTCTCAATCTTGTTACCGGCCGACTCAAGAAGCACGGAATATAAACGCAACATAGAAAAATGGTGCGCCACCACCCCACATCCCGAATCGTGCAAATACTTCATCTCTCACACTCACTCCCACCACAAGTTCAACCCGAAACACCGGTCTGAGTTCCGAAAGATATCGGTTCGAATCTCGTTAGAACGAGCCGTTGATGCCCTCAAATTCACGATGAAATTCGGCCCAAACAAGAACAACGCCCGCCAGGTAGCCGCCTGGTCGGACTGCTTAAAGCTCTACCGCAACACAGTTCTCCAGTTAAATCGAACCCTTCAAGGCTTAACCAATTACAGAAACTTGTCTTGCACGAATTTCGATGCGCAGACATGGCTTAGCACTGCTCTCACGAACATTGCAACATGCCGTACAAGTGGTGCGGATTTAAACGTTACGCATTTTATTGACCCCATCACGACATCAAACAACGTGTCGGAGCTTATTAGCAACAGTTTGGCAGTTAATGGCTTTATGCTAGGGGAAACGAGTAATTATACAGCTAATGAGGCCAGTAGAGTAGGCATGGAGGAGTACTTTCCGGTATGGGTTTCTAAGGGCGAGACGAAGTTGCTGCAGAGTTCGACCGTGAAGGCGGATGTGGTGGTGGCGAAAGATGGATCGGGGAATTACAAGACGGTCCAGGCGGCAATCGATGCGGCGGCGAGGAGGAAAGGGAGAGGGAAGTTTGTTATTTACATAAAGAGAGGCGTTTATAAGGAAAATATTGAGGTCGGGAACAATAATATTAAGGTTGTCATGATTGGGGATGGAATGAAGTATACTATAATCACTAGTAGTAGGAGTGTTGGAGGGGGTTACACCACCTATAGTTCTGCTACTGCTGGCATAGACGGAGTAGGATTTGTGGCCCGAGGCATTACGTTCATGAACACGGCCGGTCCAAAAATGGGTCAAGCCGTGGCACTCCGATCATCGTCCGATCTTTCAGTATTTTACAAATGTGCCTTCCATGGTTACCAAGACACCCTGATGGTCCTTTCACAGAGACAGTTCTATAGAGAATGCTACATCTATGGCACTATTGACTTCATATTTGGTAATGCAGCAGTTGTTTTCCAAAACTGCCTCATCTATGTAAAAAGGCCGTTAAAGGGCCAAGTTAACGTCATCACGGCCCAAGGTCGTGATGACCCATATCAAAATACAGGGATTTCTCTCCACGGTTGTCAGGTCCGAGCTGCACCGGACCTGAAGCCAGTGATGGGCTCGTTCAAGACTTACTTGGGCCGGCCTTGGAGACAATACTCTAGAACTGTCGTACTTAAAAGTTATATTGATAGCGTGGTGAGTCCAGTGGGCTGGTTACCATGGGACAAAAGCTCGTATGCTCTCGATACTTTGTATTATGGGGAGTACCAAAACTTTGGGCCTAGGGCCTCGACGAAGTACAGAGTGAGGTGGAAGGGGTTTCATGTGATCACAAGCCCAACAGTTGCAGCTAGTTTTACGGTGGCCCGGCTTATTGCGGGCCAGTCTTGGTTGCCAGGTACTGGAGTGCCATTCAGGCCCAATTTGTGA 1629 47.76 MSIVKTNLLLLIFVACFFSILLPADSRSTEYKRNIEKWCATTPHPESCKYFISHTHSHHKFNPKHRSEFRKISVRISLERAVDALKFTMKFGPNKNNARQVAAWSDCLKLYRNTVLQLNRTLQGLTNYRNLSCTNFDAQTWLSTALTNIATCRTSGADLNVTHFIDPITTSNNVSELISNSLAVNGFMLGETSNYTANEASRVGMEEYFPVWVSKGETKLLQSSTVKADVVVAKDGSGNYKTVQAAIDAAARRKGRGKFVIYIKRGVYKENIEVGNNNIKVVMIGDGMKYTIITSSRSVGGGYTTYSSATAGIDGVGFVARGITFMNTAGPKMGQAVALRSSSDLSVFYKCAFHGYQDTLMVLSQRQFYRECYIYGTIDFIFGNAAVVFQNCLIYVKRPLKGQVNVITAQGRDDPYQNTGISLHGCQVRAAPDLKPVMGSFKTYLGRPWRQYSRTVVLKSYIDSVVSPVGWLPWDKSSYALDTLYYGEYQNFGPRASTKYRVRWKGFHVITSPTVAASFTVARLIAGQSWLPGTGVPFRPNL 542
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 3453279 3455144 - Conep05aG0082800.1 Cone5ag0803 437821
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0803 542 Gene3D - 222 542 IPR012334 -
Cone5ag0803 542 ProSitePatterns Pectinesterase signature 2. 374 383 IPR033131 -
Cone5ag0803 542 CDD PMEI-like_3 38 185 - -
Cone5ag0803 542 ProSitePatterns Pectinesterase signature 1. 255 274 IPR018040 -
Cone5ag0803 542 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 34 188 IPR035513 -
Cone5ag0803 542 SUPERFAMILY Pectin lyase-like 224 539 IPR011050 -
Cone5ag0803 542 FunFam Pectinesterase 223 542 - -
Cone5ag0803 542 Pfam Plant invertase/pectin methylesterase inhibitor 34 184 IPR006501 GO:0004857(InterPro)
Cone5ag0803 542 Pfam Pectinesterase 229 527 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cone5ag0803 542 PANTHER PECTINESTERASE 9 532 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cone5ag0803 542 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Cone5ag0803 542 SMART PMEI_2 30 184 IPR006501 GO:0004857(InterPro)
Cone5ag0803 542 NCBIfam pectinesterase inhibitor domain 8 185 IPR006501 GO:0004857(InterPro)
Cone5ag0803 542 Gene3D Invertase/pectin methylesterase inhibitor family protein 31 188 IPR035513 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1096 Cone-Chr1:55449667 Cone5ag0803 Cone-Chr5:3453279 0 dispersed
Cone5ag0803 Cone-Chr5:3453279 Cone6ag0383 Cone-Chr6:1864724 3.40E-154 dispersed
Cone5ag0802 Cone-Chr5:3450694 Cone5ag0803 Cone-Chr5:3453279 5.93E-202 tandem
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0803 K01051 - mdm:103417824 694.501