Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0840 ATGACGCCTTCTCGGGTGGCTGGAGGGTTAGCACAGTCTTCATCGAGCTCTGGGATTTTCTTTCAAGGAGACGGATCGTCCCAAGCTCTTGTTAATTCTCAGTTGAGCTCATCTTTCCGCAACACATCTAATTCAATTCCGGGGACTGGGCGTTCAAATTTGGGTCCCGTTTCTGGAGACATGAACAATGCAGCTTTAAATAGCGTGGCAAACTCCGGGCCAAGCGTCGGTGCAAGTTCCTTGGTCACAGATGCAAACTCTGCACTTTCTGGAGGTGGGCCCCATTTGCAGAGAAGTGCGAGCATTAATACAGAGTCATATATGAGGCCTCCTGCCTCTCCTCTGTCATTTTCATCTAATAATATTAGTATTTCCGGCTCATCTGTGATAGATGGCTCTTCTGTAGTGCAACATAATAATTCTCATTCCCATCACGAACAAAATGCCCAACACATCCAGCCAAGCCAGCAACATCCTCAGCAAGGTGTTGCTTCAAGTGCCACGTCATTACCCTCTCAGATCGGTCAGGTTTCCCTGCCTATGGGTGCGCGACTTCCTGGGTCTTACGTTCCAGACCCGAATAATTTCTCTCAGGTTCCGAAGAAGCCACGATTGGATATTAAGCAAGAAGATATCCTGCAACAGCAGGTTTTTCAGCAACTGCTCCAGAGACAGGAGCCTATGCAGTTACAAAGCCGCAATCCACAGTTACAAGCTCTGATTCATCAACAGAGAATACGACAACAGCAGCATATCTTACAGTCTATGCCGCAGCTGCAGCGTGCTCATTTGCAGCAGCAGCAGCAGCAGCAGATGCAATTGAGGCAACAGTTGCAACAAGCAATGCAGCAGCCAGTAACTTCTGTTAAGCGTCCCTATGATGGAGGTGTTTGTGCTCTTCGACTTATGCAATATTTGTACCATCAGAGACAAAGAACCGCTGATAACAGTATAGCCTATTGGAGGAAATTTGTGGCGGAGTATTATTCTCCCCATGCAAAGAAAAGATGGTGCTTGTCGATGTATGATAATGTTGGCCATCATGCACTGGGCGTGTTTCCCCAGGCAGCAATGGATGCATGGCAGTGTGACATTTGTGGGTCAAAGTCTGGAAGGGGATTTGAGGCTACTTTTGAAGTACTCCCTAGACTCAATGAGATTAAGTACGGAAGTGGGGTCATTGATGAGCTTCTGTTTTTGGACATGCCTCGGGAATTCAGATTTCCCACTGGAGTCATGATGTTGGAGTATGGAAAGGCAGTTCAAGAGAGTATTTATGAGCAACTTCGTATAGTCCGTGAGGGACAGCTTCGTATTATATTCACACCTGAATTAAAGATATTGTCTTGGGAATTTTGTGCACGTCGTCATGAAGAACTTCTTCCTCGTAGGTTGGTTGCACCACAGGTGAATCAGTTGGTTCAGGTCGCACAGAAATGCCAGAGCACTATAGCTGAAGGTGGAACTGATGGCATTTCTGAGCAGGAATTAAAAACAAATAGCAATATGGTATTGACGGCTGGTCGTCAGCTTGCAAAGAGCTTGGAGTTACAGTCTCTCAATGACTTGGGTTTCTCTAAAAGATATGTCAGGTGTCTGCAGATTTCAGAGGTTGTCAATAGCATGAAAGATCTTGTAGATTTCTGCCGGGAGCACAAAGTTGGGCCAATTGAGGGCTTGAAAAACTATCCTCGGCATGCCAGCACAGCCAAGCTCCAAATGCAGAAACTGCGAGAAATGGAGCAGATAGCAAGCGCTCAGGGTCTACCCACCGATCGAAACACTCTTAATAAGCTGATGGCAATGCATTCGGGACTTAACACGCAGGTCAATAGCAACCATCAAATGGGTGCCCGAGTAGGAGGAACTCTGAGTGGTTCTCCTCAAGCTGCTTTGACCTTGACCACCTACCAGAACATGCTTGTGAGACAGAACTCCATGAATTCAAATGCTAGCCCACATCAACCGGAAGCCTCTTCTTTCTTCAATAACAATCCTCCTAATCAGAGTCCTTCCTCAAGCTTCCAAGGGGGGAATGGGGCTTTATTACCTGGATCCATGCAGAACTCACCTGTGAGTGGCTTTTCAAGCCCGCATCATCTACCCCCACAACAGAATCAGCAACAACCACAGCAGCTCCAACAAAGGTCCTTGAGCTCAAATAGCTTGCTCCAACAACAACAACAACAAAGCCATCCTCACTCTCAAACTGGCCTTGGAAATCACACCTTACCGCAACAGCAGATGATGCAGCAAATAATGCACATGTCGAATAACAGTGGGGTAGTACAGCAGCAGCCATCTCTTTCAGGTCCGAATCCGAATGGGAGTGTCGGACCAAGGAGTAACGGGCCTGCTCCAAGCCGGAGTAACAGCTTCAAAGCTGCGTCAAACAGTGACTCGTCTGCACCTGGTGTTGGTGGTGGTAATAATAATAATAATGGTGGGTTTAGCCAGAGGGGTGCAGCAGAGTTGACACAAAACCTTCATTTACAGGAAGGTATGGTTCAGGATATTGCCCACGAATTCACGGATAGCGGGTTTTTTAACAGCGATCTTGATGATGCTATGGATTATGGTTGGAAGGCTTAA 2592 46.95 MTPSRVAGGLAQSSSSSGIFFQGDGSSQALVNSQLSSSFRNTSNSIPGTGRSNLGPVSGDMNNAALNSVANSGPSVGASSLVTDANSALSGGGPHLQRSASINTESYMRPPASPLSFSSNNISISGSSVIDGSSVVQHNNSHSHHEQNAQHIQPSQQHPQQGVASSATSLPSQIGQVSLPMGARLPGSYVPDPNNFSQVPKKPRLDIKQEDILQQQVFQQLLQRQEPMQLQSRNPQLQALIHQQRIRQQQHILQSMPQLQRAHLQQQQQQQMQLRQQLQQAMQQPVTSVKRPYDGGVCALRLMQYLYHQRQRTADNSIAYWRKFVAEYYSPHAKKRWCLSMYDNVGHHALGVFPQAAMDAWQCDICGSKSGRGFEATFEVLPRLNEIKYGSGVIDELLFLDMPREFRFPTGVMMLEYGKAVQESIYEQLRIVREGQLRIIFTPELKILSWEFCARRHEELLPRRLVAPQVNQLVQVAQKCQSTIAEGGTDGISEQELKTNSNMVLTAGRQLAKSLELQSLNDLGFSKRYVRCLQISEVVNSMKDLVDFCREHKVGPIEGLKNYPRHASTAKLQMQKLREMEQIASAQGLPTDRNTLNKLMAMHSGLNTQVNSNHQMGARVGGTLSGSPQAALTLTTYQNMLVRQNSMNSNASPHQPEASSFFNNNPPNQSPSSSFQGGNGALLPGSMQNSPVSGFSSPHHLPPQQNQQQPQQLQQRSLSSNSLLQQQQQQSHPHSQTGLGNHTLPQQQMMQQIMHMSNNSGVVQQQPSLSGPNPNGSVGPRSNGPAPSRSNSFKAASNSDSSAPGVGGGNNNNNGGFSQRGAAELTQNLHLQEGMVQDIAHEFTDSGFFNSDLDDAMDYGWKA 863
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3596482 3601873 - Conep05aG0086600.1 Cone5ag0840 437858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0840 863 MobiDBLite consensus disorder prediction 760 819 - -
Cone5ag0840 863 Coils Coil 261 284 - -
Cone5ag0840 863 MobiDBLite consensus disorder prediction 38 59 - -
Cone5ag0840 863 MobiDBLite consensus disorder prediction 647 742 - -
Cone5ag0840 863 Pfam LIM-domain binding protein 300 561 IPR029005 -
Cone5ag0840 863 MobiDBLite consensus disorder prediction 132 171 - -
Cone5ag0840 863 PANTHER LIM DOMAIN-BINDING PROTEIN 15 852 IPR029005 GO:0000122(PANTHER)|GO:0005634(PANTHER)|GO:0005667(PANTHER)|GO:0045944(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0802 Cone-Chr17:6346743 Cone5ag0840 Cone-Chr5:3596482 1.07E-104 dispersed
Cone20ag0406 Cone-Chr20:1971557 Cone5ag0840 Cone-Chr5:3596482 2.37E-106 dispersed
Cone4ag1452 Cone-Chr4:11511786 Cone5ag0840 Cone-Chr5:3596482 3.14E-100 dispersed
Cone5ag0840 Cone-Chr5:3596482 Cone7ag1480 Cone-Chr7:10392817 8.63E-100 dispersed
Cone1ag1132 Cone-Chr1:55600990 Cone5ag0840 Cone-Chr5:3596482 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0840 - - - 0.0