Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0847 ATGGCGGATCCTCCTCCAGATCACGTGCAAAATCCAGAGAAAAATGCCAATACATCGCGCCTACTACCAAAACCACAATCACAACGGCCACTAGCCATACAAGTTCCAGATCAGATTGGTCCATATCCTAATCCTTCTATTAATGTGCTGAATAGGACATCAATTCATGATGACCCATCACCCAGACCCGTTCAATCCCCATCGTCATCTACAAGCCAGCCCGCTTCTCCTACAATGTCCGGAAGGCATCCCAAGTATCGTGGAATCCGATGTCGGAGTGGAAAATGGGTGTCGGAAATAAGAGAGCCCCGTAAAACAACACGCATTTGGCTCGGAACATACCCTACGCCGGAAATGGCGGCAGCTGCCTATGACGTGGCCGCACTTTCCCTAAAAGGCCCGGATACTGTCTTGAACTTCCCCAACGCCATATTTTCATACCAGATACCGGATTCAGCTTCAGCCAGCGATATACGGTCCGCTGCTGCGCGTGCGGCAGCGGCTTGGTTAGAATTTGGAGAAAGCCCGAAGACGGGCCAGTCTGAAAAAGAGGGAACGTCGTCGATTAGTAATGCCAGGGATCCGGTTGGATCAGAGGATTATCGTGAGGAGTTTATGGACGAAGAAGAGTTATTGAATATGCCGAATTTGTTGGTTGATATGGCAGAAGGAATGCTCGTTAGCCCTCCCAGGATTAAATCTTCACCATCGGATGATTCGCCGGAAAATTCAGATGGAGACAGACTATGGAATTATAGTACTTAG 765 48.89 MADPPPDHVQNPEKNANTSRLLPKPQSQRPLAIQVPDQIGPYPNPSINVLNRTSIHDDPSPRPVQSPSSSTSQPASPTMSGRHPKYRGIRCRSGKWVSEIREPRKTTRIWLGTYPTPEMAAAAYDVAALSLKGPDTVLNFPNAIFSYQIPDSASASDIRSAAARAAAAWLEFGESPKTGQSEKEGTSSISNARDPVGSEDYREEFMDEEELLNMPNLLVDMAEGMLVSPPRIKSSPSDDSPENSDGDRLWNYST 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3631525 3633327 + Conep05aG0087300.1 Cone5ag0847 437865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0847 254 MobiDBLite consensus disorder prediction 228 254 - -
Cone5ag0847 254 ProSiteProfiles AP2/ERF domain profile. 85 141 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag0847 254 MobiDBLite consensus disorder prediction 174 206 - -
Cone5ag0847 254 MobiDBLite consensus disorder prediction 11 25 - -
Cone5ag0847 254 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 68 220 IPR051032 -
Cone5ag0847 254 CDD AP2 84 143 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag0847 254 SMART rav1_2 85 147 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag0847 254 MobiDBLite consensus disorder prediction 44 79 - -
Cone5ag0847 254 Pfam AP2 domain 84 133 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag0847 254 SUPERFAMILY DNA-binding domain 85 142 IPR016177 GO:0003677(InterPro)
Cone5ag0847 254 Gene3D AP2/ERF domain 85 143 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag0847 254 MobiDBLite consensus disorder prediction 1 88 - -
Cone5ag0847 254 MobiDBLite consensus disorder prediction 179 194 - -
Cone5ag0847 254 FunFam Ethylene-responsive transcription factor 2 85 142 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag0847 Cone-Chr5:3631525 Cone6ag0748 Cone-Chr6:3795049 6.28E-51 dispersed
Cone5ag0847 Cone-Chr5:3631525 Cone5ag0848 Cone-Chr5:3637109 5.41E-36 tandem
Cone1ag1140 Cone-Chr1:55645962 Cone5ag0847 Cone-Chr5:3631525 1.15E-144 wgd
Cone14ag0113 Cone-Chr14:525640 Cone5ag0847 Cone-Chr5:3631525 3.12E-38 wgd
Cone15ag0118 Cone-Chr15:569337 Cone5ag0847 Cone-Chr5:3631525 7.60E-39 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46154 PF01344 Kelch_1 2.40E-06 CL0186 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0847 - - - 0.0