Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone5ag0847 | ATGGCGGATCCTCCTCCAGATCACGTGCAAAATCCAGAGAAAAATGCCAATACATCGCGCCTACTACCAAAACCACAATCACAACGGCCACTAGCCATACAAGTTCCAGATCAGATTGGTCCATATCCTAATCCTTCTATTAATGTGCTGAATAGGACATCAATTCATGATGACCCATCACCCAGACCCGTTCAATCCCCATCGTCATCTACAAGCCAGCCCGCTTCTCCTACAATGTCCGGAAGGCATCCCAAGTATCGTGGAATCCGATGTCGGAGTGGAAAATGGGTGTCGGAAATAAGAGAGCCCCGTAAAACAACACGCATTTGGCTCGGAACATACCCTACGCCGGAAATGGCGGCAGCTGCCTATGACGTGGCCGCACTTTCCCTAAAAGGCCCGGATACTGTCTTGAACTTCCCCAACGCCATATTTTCATACCAGATACCGGATTCAGCTTCAGCCAGCGATATACGGTCCGCTGCTGCGCGTGCGGCAGCGGCTTGGTTAGAATTTGGAGAAAGCCCGAAGACGGGCCAGTCTGAAAAAGAGGGAACGTCGTCGATTAGTAATGCCAGGGATCCGGTTGGATCAGAGGATTATCGTGAGGAGTTTATGGACGAAGAAGAGTTATTGAATATGCCGAATTTGTTGGTTGATATGGCAGAAGGAATGCTCGTTAGCCCTCCCAGGATTAAATCTTCACCATCGGATGATTCGCCGGAAAATTCAGATGGAGACAGACTATGGAATTATAGTACTTAG | 765 | 48.89 | MADPPPDHVQNPEKNANTSRLLPKPQSQRPLAIQVPDQIGPYPNPSINVLNRTSIHDDPSPRPVQSPSSSTSQPASPTMSGRHPKYRGIRCRSGKWVSEIREPRKTTRIWLGTYPTPEMAAAAYDVAALSLKGPDTVLNFPNAIFSYQIPDSASASDIRSAAARAAAAWLEFGESPKTGQSEKEGTSSISNARDPVGSEDYREEFMDEEELLNMPNLLVDMAEGMLVSPPRIKSSPSDDSPENSDGDRLWNYST | 254 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 3631525 | 3633327 | + | Conep05aG0087300.1 | Cone5ag0847 | 437865 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone5ag0847 | 254 | MobiDBLite | consensus disorder prediction | 228 | 254 | - | - | |
Cone5ag0847 | 254 | ProSiteProfiles | AP2/ERF domain profile. | 85 | 141 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone5ag0847 | 254 | MobiDBLite | consensus disorder prediction | 174 | 206 | - | - | |
Cone5ag0847 | 254 | MobiDBLite | consensus disorder prediction | 11 | 25 | - | - | |
Cone5ag0847 | 254 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 68 | 220 | IPR051032 | - | |
Cone5ag0847 | 254 | CDD | AP2 | 84 | 143 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone5ag0847 | 254 | SMART | rav1_2 | 85 | 147 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone5ag0847 | 254 | MobiDBLite | consensus disorder prediction | 44 | 79 | - | - | |
Cone5ag0847 | 254 | Pfam | AP2 domain | 84 | 133 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone5ag0847 | 254 | SUPERFAMILY | DNA-binding domain | 85 | 142 | IPR016177 | GO:0003677(InterPro) | |
Cone5ag0847 | 254 | Gene3D | AP2/ERF domain | 85 | 143 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone5ag0847 | 254 | MobiDBLite | consensus disorder prediction | 1 | 88 | - | - | |
Cone5ag0847 | 254 | MobiDBLite | consensus disorder prediction | 179 | 194 | - | - | |
Cone5ag0847 | 254 | FunFam | Ethylene-responsive transcription factor 2 | 85 | 142 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone5ag0847 | Cone-Chr5:3631525 | Cone6ag0748 | Cone-Chr6:3795049 | 6.28E-51 | dispersed | |
Cone5ag0847 | Cone-Chr5:3631525 | Cone5ag0848 | Cone-Chr5:3637109 | 5.41E-36 | tandem | |
Cone1ag1140 | Cone-Chr1:55645962 | Cone5ag0847 | Cone-Chr5:3631525 | 1.15E-144 | wgd | |
Cone14ag0113 | Cone-Chr14:525640 | Cone5ag0847 | Cone-Chr5:3631525 | 3.12E-38 | wgd | |
Cone15ag0118 | Cone-Chr15:569337 | Cone5ag0847 | Cone-Chr5:3631525 | 7.60E-39 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
46154 | PF01344 | Kelch_1 | 2.40E-06 | CL0186 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone5ag0847 | - | - | - | 0.0 |