Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone5ag0848 | ATGGATACTAATTTCGATTACCATTCGAGCTCGGAGAGTAGCAGTACTAGCGGTCGGAAGGCCAACTTTTCCGACGAGGAGGTTATGCTTTTGGCATCAAGCAATCCGAAGAAGAGAGCGGGAAGGAAGAAGTTTCAGGAGACGCGTCATCCGATTTACAGGGGAGTGAGGACGAGGAATTCCAACAAGTGGGTTTGCGAGGTGAGAGAGCCGAATAAGAAGACGAGGATTTGGTTGGGGACTTTTCCGACTGCTGAGATGGCAGCTCGGGCTCATGACGTCGCGGCGATAGCCCTGAGGGGTCGGTCGGCTTGTTTAAACTTTGCTGATTCGGCATGGAGATTGCCGGTGCCGGCGTCAGGTGATGCCAAGGATATTCAGAAGGCGGCAGCAGAGGCAGCGGAAAGTTTCCGGAGTCCAGAAGTGGCGGAAGATAGTGGCGGAGTGGTGGGGTTGGCGGGTGATCGTGATGATGAGCAATCGGAAGACGTGTTTTTTATGGACGAAGAAATGGTTTTTGGGATGCCTGGATTGTTAGTCAATATGGCTGAGGGAATGCTTTTGCCTCCACCTCGGTGCGATGGTTATGTCGATGTCGAATTCGATTTCGACATGTCGTTGTGGAATCATTCAATTTGA | 639 | 51.49 | MDTNFDYHSSSESSSTSGRKANFSDEEVMLLASSNPKKRAGRKKFQETRHPIYRGVRTRNSNKWVCEVREPNKKTRIWLGTFPTAEMAARAHDVAAIALRGRSACLNFADSAWRLPVPASGDAKDIQKAAAEAAESFRSPEVAEDSGGVVGLAGDRDDEQSEDVFFMDEEMVFGMPGLLVNMAEGMLLPPPRCDGYVDVEFDFDMSLWNHSI | 212 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 3637109 | 3637747 | + | Conep05aG0087400.1 | Cone5ag0848 | 437866 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone5ag0848 | 212 | PRINTS | Ethylene responsive element binding protein signature | 53 | 64 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone5ag0848 | 212 | PRINTS | Ethylene responsive element binding protein signature | 75 | 91 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone5ag0848 | 212 | SUPERFAMILY | DNA-binding domain | 52 | 111 | IPR016177 | GO:0003677(InterPro) | |
Cone5ag0848 | 212 | Gene3D | AP2/ERF domain | 52 | 110 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone5ag0848 | 212 | SMART | rav1_2 | 52 | 115 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone5ag0848 | 212 | FunFam | Ethylene-responsive transcription factor 2 | 51 | 110 | - | - | |
Cone5ag0848 | 212 | CDD | AP2 | 51 | 111 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone5ag0848 | 212 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Cone5ag0848 | 212 | Pfam | AP2 domain | 52 | 101 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone5ag0848 | 212 | ProSiteProfiles | AP2/ERF domain profile. | 52 | 109 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone5ag0848 | 212 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D | 9 | 209 | IPR045277 | GO:0003700(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone14ag0113 | Cone-Chr14:525640 | Cone5ag0848 | Cone-Chr5:3637109 | 3.42E-90 | dispersed | |
Cone15ag0118 | Cone-Chr15:569337 | Cone5ag0848 | Cone-Chr5:3637109 | 9.56E-93 | dispersed | |
Cone1ag1141 | Cone-Chr1:55651833 | Cone5ag0848 | Cone-Chr5:3637109 | 5.58E-129 | dispersed | |
Cone5ag0848 | Cone-Chr5:3637109 | Cone6ag0746 | Cone-Chr6:3787184 | 9.41E-81 | dispersed | |
Cone5ag0847 | Cone-Chr5:3631525 | Cone5ag0848 | Cone-Chr5:3637109 | 5.41E-36 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
46155 | PF12430 | ABA_GPCR | 2.60E-18 | No_clan | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone5ag0848 | - | - | - | 0.0 |