Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0848 ATGGATACTAATTTCGATTACCATTCGAGCTCGGAGAGTAGCAGTACTAGCGGTCGGAAGGCCAACTTTTCCGACGAGGAGGTTATGCTTTTGGCATCAAGCAATCCGAAGAAGAGAGCGGGAAGGAAGAAGTTTCAGGAGACGCGTCATCCGATTTACAGGGGAGTGAGGACGAGGAATTCCAACAAGTGGGTTTGCGAGGTGAGAGAGCCGAATAAGAAGACGAGGATTTGGTTGGGGACTTTTCCGACTGCTGAGATGGCAGCTCGGGCTCATGACGTCGCGGCGATAGCCCTGAGGGGTCGGTCGGCTTGTTTAAACTTTGCTGATTCGGCATGGAGATTGCCGGTGCCGGCGTCAGGTGATGCCAAGGATATTCAGAAGGCGGCAGCAGAGGCAGCGGAAAGTTTCCGGAGTCCAGAAGTGGCGGAAGATAGTGGCGGAGTGGTGGGGTTGGCGGGTGATCGTGATGATGAGCAATCGGAAGACGTGTTTTTTATGGACGAAGAAATGGTTTTTGGGATGCCTGGATTGTTAGTCAATATGGCTGAGGGAATGCTTTTGCCTCCACCTCGGTGCGATGGTTATGTCGATGTCGAATTCGATTTCGACATGTCGTTGTGGAATCATTCAATTTGA 639 51.49 MDTNFDYHSSSESSSTSGRKANFSDEEVMLLASSNPKKRAGRKKFQETRHPIYRGVRTRNSNKWVCEVREPNKKTRIWLGTFPTAEMAARAHDVAAIALRGRSACLNFADSAWRLPVPASGDAKDIQKAAAEAAESFRSPEVAEDSGGVVGLAGDRDDEQSEDVFFMDEEMVFGMPGLLVNMAEGMLLPPPRCDGYVDVEFDFDMSLWNHSI 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3637109 3637747 + Conep05aG0087400.1 Cone5ag0848 437866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0848 212 PRINTS Ethylene responsive element binding protein signature 53 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag0848 212 PRINTS Ethylene responsive element binding protein signature 75 91 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag0848 212 SUPERFAMILY DNA-binding domain 52 111 IPR016177 GO:0003677(InterPro)
Cone5ag0848 212 Gene3D AP2/ERF domain 52 110 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag0848 212 SMART rav1_2 52 115 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag0848 212 FunFam Ethylene-responsive transcription factor 2 51 110 - -
Cone5ag0848 212 CDD AP2 51 111 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag0848 212 MobiDBLite consensus disorder prediction 1 22 - -
Cone5ag0848 212 Pfam AP2 domain 52 101 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag0848 212 ProSiteProfiles AP2/ERF domain profile. 52 109 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag0848 212 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 9 209 IPR045277 GO:0003700(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0113 Cone-Chr14:525640 Cone5ag0848 Cone-Chr5:3637109 3.42E-90 dispersed
Cone15ag0118 Cone-Chr15:569337 Cone5ag0848 Cone-Chr5:3637109 9.56E-93 dispersed
Cone1ag1141 Cone-Chr1:55651833 Cone5ag0848 Cone-Chr5:3637109 5.58E-129 dispersed
Cone5ag0848 Cone-Chr5:3637109 Cone6ag0746 Cone-Chr6:3787184 9.41E-81 dispersed
Cone5ag0847 Cone-Chr5:3631525 Cone5ag0848 Cone-Chr5:3637109 5.41E-36 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46155 PF12430 ABA_GPCR 2.60E-18 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0848 - - - 0.0