Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0856 ATGAGCAGAGGTTTCAACTCCAACCTTTTGTTTCTCGTCTTCTCTGTTTTCGGCCTGTGCTTTTTGAGCTCCATTAATGGCATCTCAGACCAGAAGCGAGGAAACCCAGAGAGAGAAAGCTTGCTTTTGTTCAAAGCAGCTCTTGAAAATCCTCACGTACTTTTTTCATGGAACCCGTCACTCCCACACTGTACCTGGCTAGGCATCACTTGCCGACTCGGCCGAGCTGTTCAACTCGTTCTTCCATCTCTGAACCTTAAAGGACCTCTCTCTCCCTCCATTTTCAACCTCTCCCACCTCACCGTCCTTGACCTTTCCAGTAACCTTCTCTATGGTAAATTCCCACCTGAGATATCCAACCTTCAACGCTTGAAGGAGCTCTCACTTACCGGAAACCGATTCTCCGGCGAGTTTCCGAGTGAATTCACTGAGTTGACTCAGTTAGAAACGCTAAAACTCGGGTTTAACTCCTTCACCAAAAACATTCCGCCAGAGCTCGGGACTTTGAGACAGCTTCGAACCCTCGACCTCTCCGGCAACGACTTCTCTGGAGACCTGCCAGACCACATCGGAAACTTGACCCAGCTCCGGTTTCTTGACCTTGGCAGCAACCTCTTATCAGGTTCGCTCCCATTAACCCTCGTCTCTAACCTTCGATCTTTAACTTCCTTAGACATTTCAAATAACTCGTTTTCAGGCTCAATACCGCCCGAAATTAGCAACCTGAAAAACCTCACCAACCTTTATATCAGCACAAATCACTTTTCTGGTCCTTTGCCCCGTGAAATTGGTAACCTACCATTGCTTGAAAACTTTTTCGCACCAAGTTGTTCTATAACTGGTCCATTGCCAGATGAACTGTCCAACTTAAAATCACTTAGCAAACTCGACCTTTCATATAACCCACTCAAGTGCTCTATCCCAAAATCCATAGGCAAGTTGCAGAAATTGACAATACTAAGTCTTGTCTATGCTGAGCTTAATGGGTCGATTCCCTTAGAGCTTGGAAAGTGTAGGAATTTGAAAGCTTTGACTCTCTCGTTCAATTCACTATCTGGGTTGTTGCCTGAAGAGCTTTCTGAGCTTCCCATGTTGACATTTTCTGCTGAAAAGAATCAGCTTTCTGGGCCATTACCTCATTGGCTCGGGAAGTGGAATCAGGTTGATTCTCTTTTGCTTTCAGGAAATCAGTTTTCGGGGAATATTCCTCCAGAGATTGGAAACTGTTCTATGCTCAAGTACCTTAGCTTGAGCAATAACTTTCTTGTGGGCCAAATACCTGAAGAGCTCTGTAATGCAGTGTCACTAACGGAGATTGATCTCGACAGAAATTTTCTTTCCAGTTCGATTCATAGAACGTTTTTGAAATGTAGAAACCTTACACAGTTGGTGTTAGTCAGTAATCAGATTACTGGTCCGATTCCAGCTTACCTTTCCGAGCTTCCTCTAATGGTGGTTGACCTTGACTGGAATAATTTTACTGGTACAATACCTAGAAGTCTTTGGAGCTCAGAAAGTTTAATGGAATTTTCTGCTGCTAATAATCTATTAGAGGGTTCTCTCCCAATGGAGATTGGCAATGTAGTTTCGTTGGAAAGGCTTGTTCTTAGCAACAATCAATTGAGTGGCACTATACCAAAGGAAATGGGGAATCTCCAAGCTCTCTCTGTTCTGAATCTTAATTCAAATTTCCTTAAAGGGAATATTCCGCCCTCGCTCGGTTCCTGCACTGGACTCACTACGTTGGACCTTGGAAACAACAGTCTAAACGGGTCAATCCCCAAATCACTCTCTGAACTGGCTCAGTTACAATGCCTTGTTCTTTCTCACAATAACCTTTCAGGACCAATCCCTTCTAAGCCTTCTGGGTATTTTCGGCAGTCGAATATTCCAGATTCAGTCTTTCTCCAGCACCATGGAGTATTTGACTTGTCTTATAACAGATTAACAGGTCGAATTCCAGATGAATTGGGGAATTGTGTGGTTGTTATTGATCTTTTGTTGAGCAACAACCTCCTTTCGGGTCAGATTCCAAGTTCGCTTTCTCGCCTTACAAATCTAACAACCTTGGATCTATCTGGGAATCTGCTGGTTGGTTCCATTCCTTCAGAATTTGGTGATTCCCTTAAGCTTCAAGGCTTGTATCTTGCGAATAATCAGCTGAACGGAACGATTCCAGGTAGGTTAGGCCTTTTAAGCAGCTTGGTAAAGCTGAACTTAACCGGAAACAAGTTGTCCGGCTCTGTTCCAGTGAGTCTCGGTTTTCTGAAGGCACTAACTGATTTAGATTTGAGTTCTAATGAGTTAGAGGGTGGGCTTCCGTCTTCTATTTCCAGCATGCTGAATCTAGTAAGGCTTTATGTTCAGAGAAATAAGCTTTCTGGTCGGGTTGATGAGCTGTTTTCAAATTCAATGGGGTGGAGGATTGAAGCTATGAACTTGAGTAATAATTTATTTCAAGGGATACTTCCAGGCTCCTTGGGAAACCTGTCGTACTTGACAACTTTAGATCTTCATGGAAATATGTTTTCTGGACAGATTCCATCAGATATTGGAAACCTGATGCAGCTTGAGTTTTTTGATGTTTCAAAAAACCAGTTTTCTGGACAGATTCCGGATGAACTATGCAATCTTAATAACTTGCTTTACCTGAATCTTGCACAAAACAGATTTTATGGGCCTATTCCAAGAAATGGGTATTGCCAGAATCTATCAAGAAATTCACTTTCTGGGAATGAAGATCTGTGTGGGAGAATCATGGGTGTTAATTGCCGAAGCAGAAGCATCCAGAGATCCACATTGTTGAATTCTAAGGGACTTTCTGGAGTTGTCATTGGATGTGTACTAATCATTCTTTCAGTAGCACTTGTGCTAAGGAGATTGTTTATTAGAAGGCCGAGAGAGCTTGAAAATATGGATGAAAGCAAACTGAACAGCTTTATAGACCCGAGCCTATACTTCTTAAGCAGCAATAGCAGATCAAAAGAGCCCTTGAGCATTAACATTGCAATGTTTGAGCAGCCTCTTATGAAACTCACCTTGGTGAACATTCTTGAAGCAACCAACAATTTCTGCAAGACTAACATAATTGGAGATGGAGGTTTTGGAACAGTTTACAAAGCCATTCTGCCCGATGGAAAAACCGTTGCTGTTAAGAAACTAAGCGATGCAAAAACACAAGGCAATAGGGAGTTCATGGCTGAGATGGAAACTCTAGGCAAAGTGAAGCACCAAAACCTTGTCCCATTACTTGGGTACTGCTCCCTTGGAGAAGAGAAGCTCTTGGTCTATGAATACATGGTCAACGGAAGCTTAGACCTTTGGCTAAGAAACCGAACGGGAACCCTTGAAATACTTGATTGGAACCGACGGTTTAAAATTGCTTATGGTGCAGCCCGTGGGTTAGCTTTTCTTCACCATGGGTTCATTCCCCATATTATTCATAGAGACATAAAAGCAAGCAACATTCTTTTGAATGAAGATTTTGAACCAAAAGTAGCGGATTTCGGTCTGGCAAGACTGATCAGTGCTTGTGAGACTCATGTTTCTACTGATATTGCCGGAACATTCGGTTATATCCCGCCTGAGTATGGTCAAAGTGGGAGGTGTAGCGCAAAAGGAGACGTTTATAGTTTCGGTGTTATTTTATTGGAGCTGATAACAGGGAAAGAGCCGACCGGGCCAGACTTCAAGGAAATTGAAGGTGGGAATTTGGTTGGATGGGTGTTTCAGAAGATGAAGAAGGGGCATAATGCGGATGTTCTTGATCCGACGGTTCTGAATGCAGATTCGAAGAATAAGATGATTCAAATGCTGAACATTGCTTGTGTTTGCTTGTCTGATAATCCTGCTAATAGACCTACAATGCTTCAGGTGTTGAAGTTCTTGAAGGGGATCAAGGAAATGTAG 3909 42.82 MSRGFNSNLLFLVFSVFGLCFLSSINGISDQKRGNPERESLLLFKAALENPHVLFSWNPSLPHCTWLGITCRLGRAVQLVLPSLNLKGPLSPSIFNLSHLTVLDLSSNLLYGKFPPEISNLQRLKELSLTGNRFSGEFPSEFTELTQLETLKLGFNSFTKNIPPELGTLRQLRTLDLSGNDFSGDLPDHIGNLTQLRFLDLGSNLLSGSLPLTLVSNLRSLTSLDISNNSFSGSIPPEISNLKNLTNLYISTNHFSGPLPREIGNLPLLENFFAPSCSITGPLPDELSNLKSLSKLDLSYNPLKCSIPKSIGKLQKLTILSLVYAELNGSIPLELGKCRNLKALTLSFNSLSGLLPEELSELPMLTFSAEKNQLSGPLPHWLGKWNQVDSLLLSGNQFSGNIPPEIGNCSMLKYLSLSNNFLVGQIPEELCNAVSLTEIDLDRNFLSSSIHRTFLKCRNLTQLVLVSNQITGPIPAYLSELPLMVVDLDWNNFTGTIPRSLWSSESLMEFSAANNLLEGSLPMEIGNVVSLERLVLSNNQLSGTIPKEMGNLQALSVLNLNSNFLKGNIPPSLGSCTGLTTLDLGNNSLNGSIPKSLSELAQLQCLVLSHNNLSGPIPSKPSGYFRQSNIPDSVFLQHHGVFDLSYNRLTGRIPDELGNCVVVIDLLLSNNLLSGQIPSSLSRLTNLTTLDLSGNLLVGSIPSEFGDSLKLQGLYLANNQLNGTIPGRLGLLSSLVKLNLTGNKLSGSVPVSLGFLKALTDLDLSSNELEGGLPSSISSMLNLVRLYVQRNKLSGRVDELFSNSMGWRIEAMNLSNNLFQGILPGSLGNLSYLTTLDLHGNMFSGQIPSDIGNLMQLEFFDVSKNQFSGQIPDELCNLNNLLYLNLAQNRFYGPIPRNGYCQNLSRNSLSGNEDLCGRIMGVNCRSRSIQRSTLLNSKGLSGVVIGCVLIILSVALVLRRLFIRRPRELENMDESKLNSFIDPSLYFLSSNSRSKEPLSINIAMFEQPLMKLTLVNILEATNNFCKTNIIGDGGFGTVYKAILPDGKTVAVKKLSDAKTQGNREFMAEMETLGKVKHQNLVPLLGYCSLGEEKLLVYEYMVNGSLDLWLRNRTGTLEILDWNRRFKIAYGAARGLAFLHHGFIPHIIHRDIKASNILLNEDFEPKVADFGLARLISACETHVSTDIAGTFGYIPPEYGQSGRCSAKGDVYSFGVILLELITGKEPTGPDFKEIEGGNLVGWVFQKMKKGHNADVLDPTVLNADSKNKMIQMLNIACVCLSDNPANRPTMLQVLKFLKGIKEM 1302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3659828 3663736 + Conep05aG0088200.1 Cone5ag0856 437874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0856 1302 Pfam Leucine Rich Repeat 530 552 IPR001611 GO:0005515(InterPro)
Cone5ag0856 1302 Pfam Leucine Rich Repeat 810 830 IPR001611 GO:0005515(InterPro)
Cone5ag0856 1302 Pfam Leucine Rich Repeat 856 878 IPR001611 GO:0005515(InterPro)
Cone5ag0856 1302 Pfam Leucine Rich Repeat 292 314 IPR001611 GO:0005515(InterPro)
Cone5ag0856 1302 Pfam Leucine Rich Repeat 123 145 IPR001611 GO:0005515(InterPro)
Cone5ag0856 1302 Pfam Leucine Rich Repeat 642 660 IPR001611 GO:0005515(InterPro)
Cone5ag0856 1302 Pfam Leucine Rich Repeat 833 854 IPR001611 GO:0005515(InterPro)
Cone5ag0856 1302 Pfam Leucine Rich Repeat 340 362 IPR001611 GO:0005515(InterPro)
Cone5ag0856 1302 Pfam Leucine Rich Repeat 412 432 IPR001611 GO:0005515(InterPro)
Cone5ag0856 1302 Pfam Leucine Rich Repeat 220 242 IPR001611 GO:0005515(InterPro)
Cone5ag0856 1302 Pfam Leucine Rich Repeat 99 121 IPR001611 GO:0005515(InterPro)
Cone5ag0856 1302 Pfam Leucine Rich Repeat 686 706 IPR001611 GO:0005515(InterPro)
Cone5ag0856 1302 Pfam Leucine Rich Repeat 759 780 IPR001611 GO:0005515(InterPro)
Cone5ag0856 1302 Pfam Leucine Rich Repeat 734 756 IPR001611 GO:0005515(InterPro)
Cone5ag0856 1302 Pfam Leucine Rich Repeat 390 409 IPR001611 GO:0005515(InterPro)
Cone5ag0856 1302 Pfam Leucine Rich Repeat 244 266 IPR001611 GO:0005515(InterPro)
Cone5ag0856 1302 SMART LRR_typ_2 97 121 IPR003591 -
Cone5ag0856 1302 SMART LRR_typ_2 756 779 IPR003591 -
Cone5ag0856 1302 SMART LRR_typ_2 218 242 IPR003591 -
Cone5ag0856 1302 SMART LRR_typ_2 780 803 IPR003591 -
Cone5ag0856 1302 SMART LRR_typ_2 528 551 IPR003591 -
Cone5ag0856 1302 SMART LRR_typ_2 732 755 IPR003591 -
Cone5ag0856 1302 SMART LRR_typ_2 338 361 IPR003591 -
Cone5ag0856 1302 SMART LRR_typ_2 600 637 IPR003591 -
Cone5ag0856 1302 SMART LRR_typ_2 193 217 IPR003591 -
Cone5ag0856 1302 SMART LRR_typ_2 684 708 IPR003591 -
Cone5ag0856 1302 SMART LRR_typ_2 552 576 IPR003591 -
Cone5ag0856 1302 SMART LRR_typ_2 290 314 IPR003591 -
Cone5ag0856 1302 SMART LRR_typ_2 145 169 IPR003591 -
Cone5ag0856 1302 SMART LRR_typ_2 830 854 IPR003591 -
Cone5ag0856 1302 Gene3D Phosphorylase Kinase; domain 1 987 1099 - -
Cone5ag0856 1302 Pfam Leucine rich repeat N-terminal domain 35 71 IPR013210 -
Cone5ag0856 1302 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 665 1300 IPR051564 GO:0016020(PANTHER)
Cone5ag0856 1302 ProSitePatterns Protein kinases ATP-binding region signature. 1030 1053 IPR017441 GO:0005524(InterPro)
Cone5ag0856 1302 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 632 928 - -
Cone5ag0856 1302 Gene3D Ribonuclease Inhibitor 35 215 IPR032675 -
Cone5ag0856 1302 Gene3D Ribonuclease Inhibitor 369 519 IPR032675 -
Cone5ag0856 1302 Pfam Protein tyrosine and serine/threonine kinase 1028 1295 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone5ag0856 1302 FunFam serine/threonine-protein kinase BRI1-like 2 1100 1302 - -
Cone5ag0856 1302 FunFam Uncharacterized protein 366 630 - -
Cone5ag0856 1302 SUPERFAMILY L domain-like 48 366 - -
Cone5ag0856 1302 Pfam Leucine rich repeat 555 613 IPR001611 GO:0005515(InterPro)
Cone5ag0856 1302 Pfam Leucine rich repeat 147 206 IPR001611 GO:0005515(InterPro)
Cone5ag0856 1302 FunFam leucine-rich repeat receptor protein kinase EMS1 216 365 - -
Cone5ag0856 1302 SMART serkin_6 1024 1296 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag0856 1302 SMART LRR_sd22_2 756 782 - -
Cone5ag0856 1302 SMART LRR_sd22_2 242 268 - -
Cone5ag0856 1302 SMART LRR_sd22_2 576 602 - -
Cone5ag0856 1302 SMART LRR_sd22_2 193 220 - -
Cone5ag0856 1302 SMART LRR_sd22_2 97 123 - -
Cone5ag0856 1302 SMART LRR_sd22_2 290 311 - -
Cone5ag0856 1302 SMART LRR_sd22_2 684 716 - -
Cone5ag0856 1302 SUPERFAMILY Protein kinase-like (PK-like) 1004 1296 IPR011009 -
Cone5ag0856 1302 ProSiteProfiles Protein kinase domain profile. 1024 1302 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag0856 1302 Gene3D Transferase(Phosphotransferase) domain 1 1100 1302 - -
Cone5ag0856 1302 SUPERFAMILY L domain-like 370 623 - -
Cone5ag0856 1302 Gene3D Ribonuclease Inhibitor 520 626 IPR032675 -
Cone5ag0856 1302 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1146 1158 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone5ag0856 1302 FunFam Leucine-rich repeat receptor-like protein kinase 34 188 - -
Cone5ag0856 1302 Gene3D Ribonuclease Inhibitor 627 927 IPR032675 -
Cone5ag0856 1302 Gene3D Ribonuclease Inhibitor 216 368 IPR032675 -
Cone5ag0856 1302 FunFam serine/threonine-protein kinase BRI1-like 2 986 1099 - -
Cone5ag0856 1302 SUPERFAMILY L domain-like 633 917 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0052 Cone-Chr13:329681 Cone5ag0856 Cone-Chr5:3659828 5.46E-64 dispersed
Cone19ag0902 Cone-Chr19:7030483 Cone5ag0856 Cone-Chr5:3659828 5.68E-65 dispersed
Cone5ag0856 Cone-Chr5:3659828 Cone6ag1315 Cone-Chr6:10561015 6.91E-102 dispersed
Cone6ag0525 Cone-Chr6:2608907 Cone5ag0856 Cone-Chr5:3659828 2.12E-68 dispersed
Cone9ag0955 Cone-Chr9:4755392 Cone5ag0856 Cone-Chr5:3659828 3.93E-48 dispersed
Cone9ag0956 Cone-Chr9:4764515 Cone5ag0856 Cone-Chr5:3659828 1.73E-48 dispersed
Cone1ag1147 Cone-Chr1:55682615 Cone5ag0856 Cone-Chr5:3659828 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82850 None None None None Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0856 - - - 0.0