Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0861 ATGGTGATGCAAATATGGGAGACAATAAAGGAGGCAATATTAGCGTACACGGGCCTCTCTCCGGCCACCTTCTTCACAGTGATAGCTCTTAGCTTCACAATTTACTATGCGTTCTCTGTATACTCCGATTACCGCAGCGTCCAGAGGGACCGTGCCCGTGACTATCAGGAGCCTGAGATGACTCCTCTGCCTCCCCCTGTTCAGCTCGGTGAAATCAGCGAGGAGGAGCTCAAGCAATACGACGGTTCCGATCCAAATAAACCCTTGCTCATGGCCATCAAATCCCAGATCTATGATGTGTCTCAAAGCAGGATGTTTTATGGGCCTGGTGGACCGTATGCTCTATTTGCCGGGAAGGATGCAAGCCGGGCTCTTGCAAAGATGTCTTTTGAAGATAAGGATCTAACAGGGGATACCTCTGGGCTCGGCCCATTCGAACTTGACGCCTTGCAGGACTGGGAATACAAATTTATGAGCAAGTATGTGAAGGTCGGAACTATAAAAAAGGCAGTTGAAGTAACAGAATCTACAGATCAGGATATTCCGAAGCCTGTTGAAGATGGCCCGTCTGAAATCCCGGCTCGTAAAGCTGAGGAAGAAGAACCTTCTGGCTCTAATGCTGAGTAG 627 48.96 MVMQIWETIKEAILAYTGLSPATFFTVIALSFTIYYAFSVYSDYRSVQRDRARDYQEPEMTPLPPPVQLGEISEEELKQYDGSDPNKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEDKDLTGDTSGLGPFELDALQDWEYKFMSKYVKVGTIKKAVEVTESTDQDIPKPVEDGPSEIPARKAEEEEPSGSNAE 208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3677605 3679323 - Conep05aG0088700.1 Cone5ag0861 437879

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0861 208 FunFam Membrane steroid-binding protein 1 70 168 - -
Cone5ag0861 208 Pfam Cytochrome b5-like Heme/Steroid binding domain 73 167 IPR001199 -
Cone5ag0861 208 Gene3D - 70 168 IPR036400 -
Cone5ag0861 208 MobiDBLite consensus disorder prediction 173 208 - -
Cone5ag0861 208 PANTHER MEMBRANE-ASSOCIATED PROGESTERONE RECEPTOR COMPONENT-RELATED 3 184 IPR050577 GO:0005783(PANTHER)|GO:0012505(PANTHER)|GO:0016020(PANTHER)
Cone5ag0861 208 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 63 168 IPR036400 -
Cone5ag0861 208 SMART Cyt_b5_2 72 168 IPR001199 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0861 K17278 - - rcu:8258264 285.419
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0314 Cone-Chr20:1399312 Cone5ag0861 Cone-Chr5:3677605 9.76E-33 dispersed
Cone1ag1152 Cone-Chr1:55699946 Cone5ag0861 Cone-Chr5:3677605 8.63E-130 wgd
Cone14ag0095 Cone-Chr14:467128 Cone5ag0861 Cone-Chr5:3677605 4.60E-97 wgd
Cone15ag0101 Cone-Chr15:503641 Cone5ag0861 Cone-Chr5:3677605 4.70E-94 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g598 . . Bda01g00658 . . Bpe02g00531 . Bma01g02176 Cmo05g00346 . . Cma05g00342 . . Sed11g1134 . . Bhi04g00061 Tan02g2775 Cmetu03g1614 . . . Lcy13g1841 . . . . . . . Cone1ag1152 Cone5ag0861 Cone14ag0095 Cone15ag0101 . . . Cme03g01566 . . . . . . . . . . . . . . Car05g00288 Cpe11g00288 . . . . . . . . Cla08g01375 Cam08g1844 Cec08g1422 Cco08g1555 Clacu08g1539 . Cre08g1322 Lsi08g01257 . Chy03g01077 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007019 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 0 37