Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0867 ATGGCTGTGAATGATGAATGCAAACTGAAGTTCTCGGAGCTAAAAACAAAGAGGAACTATCGATTCATTGTGTTCAAGATTGAGAGCCAGGAAGTTGTGGTGGAGAAATTTGGAAGCCCTGAAGAAACTTACGATGATTTCACGGCGTCTCTACCTGCTGATGAGTGCCGATATGCTGTCTTTGATTTTGATTTCACTACTGCTGAGAATTGCCAGAAAAGCAAGATCTTCTTCATTGCATGGTCACCGGATACATCGAAAGTGAGAATGAAAATGGTGTATGCGAGCTCTAAGGACAGATTCAAAAGGGAACTTGATGGCATCCAAGTTGAGTTGCAAGCAACGGATCCCAGTGAAATGAGCTTCGACATTATCAAAGCACGAGCATTTTAA 393 42.24 MAVNDECKLKFSELKTKRNYRFIVFKIESQEVVVEKFGSPEETYDDFTASLPADECRYAVFDFDFTTAENCQKSKIFFIAWSPDTSKVRMKMVYASSKDRFKRELDGIQVELQATDPSEMSFDIIKARAF 130
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3693345 3693951 - Conep05aG0089300.1 Cone5ag0867 437885

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0867 130 ProSiteProfiles ADF-H domain profile. 1 130 IPR002108 GO:0003779(InterPro)
Cone5ag0867 130 Pfam Cofilin/tropomyosin-type actin-binding protein 7 127 IPR002108 GO:0003779(InterPro)
Cone5ag0867 130 SUPERFAMILY Actin depolymerizing proteins 2 128 - -
Cone5ag0867 130 CDD ADF_cofilin_like 1 129 IPR017904 GO:0015629(InterPro)|GO:0030042(InterPro)
Cone5ag0867 130 FunFam Actin-depolymerizing factor 2 1 130 - -
Cone5ag0867 130 PANTHER COFILIN-RELATED 1 129 IPR017904 GO:0005737(PANTHER)|GO:0015629(PANTHER)|GO:0015629(InterPro)|GO:0030042(PANTHER)|GO:0030042(InterPro)|GO:0051015(PANTHER)
Cone5ag0867 130 SMART adf_2 5 130 IPR002108 GO:0003779(InterPro)
Cone5ag0867 130 Gene3D Severin 1 129 IPR029006 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0867 K05765 - - csv:116402770 244.202
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag0867 Cone-Chr5:3693345 Cone6ag0763 Cone-Chr6:3890274 8.54E-76 dispersed
Cone1ag1157 Cone-Chr1:55715755 Cone5ag0867 Cone-Chr5:3693345 8.89E-80 wgd
Cone18ag1089 Cone-Chr18:7988241 Cone5ag0867 Cone-Chr5:3693345 1.58E-76 wgd
Cone5ag0867 Cone-Chr5:3693345 Cone9ag0769 Cone-Chr9:3685427 1.26E-71 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g676 . . . . Bpe03g00111 . . Bma14g02084 . . Cma02g01068 Cma15g01098 Car02g00811 Car15g01009 . Cpe05g00651 . . . . . . . . Cla01g00433 Cam01g0456 Cec01g0445 Cco01g0467 Clacu01g0455 Cmu01g0434 Cre09g2078 . Cone5ag0867 . . Lsi05g01225 . . . . Blo09g00112 . . . . . . . Cmo02g01086 Cmo15g01156 Cma16g00125 . . Car18g01154 Cpe09g00090 Cpe13g00253 Bhi12g00511 . . . Hepe06g0702 . . Cla05g00883 Cam05g0971 Cec05g0975 Cco05g0975 Clacu05g0958 Cmu05g0915 Cre05g0999 Lsi09g00095 Csa03g01712 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000141 6 14 5 5 6 6 11 5 5 6 6 6 12 6 6 9 6 7 12 5 7 7 6 5 7 5 5 13 9 5 213