Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0868 ATGAAGAAGAGGATGAAGAAGAGGAAAGACAAGGAGTGGAAGAAATTCAAGCTGGAAAAGAAAAAATCCGACGGGCTCAAACCTCAAAATCAACCCAGAAATAACAAATTTACAAAGAAGCCCCTTAGAGTTCCTGGAATGAAACCAGGTGATAGCTGTTTCATCTGCCACGCTAAAGACCATATCTCCAAGCTTTGCCCGGAGAGAGCTGGCTGGGAAAGGGACAAGATATGCTTACTTTGTAGAAGGCGTGGGCATAGTCTAAAGAACTGCCCTAACCCGAGTGCTAAAACGGATAAGAAGATATGCTATAACTGTGGAGAAACAGGGCATCCTCTTTCTAATTGTCCTTACCCTCTTGAAGATGGTGGGAGTAAGTTTGCGGAATGCTTTATTTGTCATGAAACCGGACATTTAAGCAAAAACTGCCCACAGAATACTCATGGAATCTACCCTAAGGGTGGAAGCTGTAAAATTTGTGATGGTGTGACCCACCTGGCTAACGATTGTCCTAACAAGGGCAGTAGATTTTCTTCTGCTACTGGTACATCTGCAAGGACATATGGAGATAGTCCAAGAGCTCAGGTGACCAAATTTTATAGTGGGGACGATCTTGAAGATTATTTCACAATGGAGGAAATGGACATGGGAGCCAACAAGTCTTCTGCTCTAAAATCAGGTCCTAGTGCTGATAATAAAGACATTAATACAAAAACGAAGAAACATGAGCCGAAAGTTGTAAATTTTGTTGGATGA 756 42.2 MKKRMKKRKDKEWKKFKLEKKKSDGLKPQNQPRNNKFTKKPLRVPGMKPGDSCFICHAKDHISKLCPERAGWERDKICLLCRRRGHSLKNCPNPSAKTDKKICYNCGETGHPLSNCPYPLEDGGSKFAECFICHETGHLSKNCPQNTHGIYPKGGSCKICDGVTHLANDCPNKGSRFSSATGTSARTYGDSPRAQVTKFYSGDDLEDYFTMEEMDMGANKSSALKSGPSADNKDINTKTKKHEPKVVNFVG 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3695064 3696537 - Conep05aG0089400.1 Cone5ag0868 437886

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0868 251 Gene3D - 46 98 - -
Cone5ag0868 251 Gene3D - 124 187 - -
Cone5ag0868 251 SUPERFAMILY Retrovirus zinc finger-like domains 98 147 IPR036875 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone5ag0868 251 ProSiteProfiles Zinc finger CCHC-type profile. 130 145 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone5ag0868 251 PANTHER OS04G0555800 PROTEIN 4 250 - -
Cone5ag0868 251 SUPERFAMILY Retrovirus zinc finger-like domains 46 95 IPR036875 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone5ag0868 251 MobiDBLite consensus disorder prediction 219 251 - -
Cone5ag0868 251 ProSiteProfiles Zinc finger CCHC-type profile. 103 117 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone5ag0868 251 Pfam Zinc knuckle 102 117 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone5ag0868 251 Pfam Zinc knuckle 130 145 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone5ag0868 251 MobiDBLite consensus disorder prediction 1 42 - -
Cone5ag0868 251 SMART c2hcfinal6 156 172 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone5ag0868 251 SMART c2hcfinal6 77 93 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone5ag0868 251 SMART c2hcfinal6 52 68 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone5ag0868 251 SMART c2hcfinal6 129 145 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone5ag0868 251 SMART c2hcfinal6 102 118 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone5ag0868 251 MobiDBLite consensus disorder prediction 1 15 - -
Cone5ag0868 251 Gene3D - 99 123 - -
Cone5ag0868 251 FunFam Zinc finger CCHC-type-containing 9 127 180 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0868 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag0868 Cone-Chr5:3695064 Cone5ag0869 Cone-Chr5:3697180 4.42E-11 tandem
Cone1ag1158 Cone-Chr1:55719507 Cone5ag0868 Cone-Chr5:3695064 7.88E-12 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g677 . . Bda05g00075 . Bpe03g00286 . . . . Cmo18g01271 . . . . Sed01g3584 . Cpe14g00107 Bhi01g01319 Tan01g0250 Cmetu06g0041 . Hepe07g0157 Mch10g0153 . . . . . . . . Cone1ag1157 Cone5ag0868 . . Lsi05g01224 . . Cme06g01001 Blo07g00410 . . . . . . . . . . Cma16g00124 Cma18g01248 Car16g00113 Car18g01155 Cpe09g00089 . . . . . . . . . . . . . . . . Csa03g01713 Chy06g00948 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010880 1 1 1 0 1 1 2 1 1 0 0 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 31