Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0876 ATGGCTTCAGATTCAAAGGAACCGATTGAGCAAGCGAAGATCGGTATGCACCTTGGCATGCGCTTAAAATCAGATCGGAAGGTTCGAGTGGTGGCAAAAGTTAGGGGTTTTACTGGATTGGAAGGTGGGGATTCCACGAGCTCGTGTATCTGTGTGAACAACCCTAGTGGCGAGGGGTCTGAGGCTGTAATCATCAGTTTTGGTGACCAATCTTTAAGTCATAAAGATTCTTATGAATTTGATTATTGCTATGAGCAAAATCAAGAGAATGATGTCATTTTCTCAAGAGAAGTGAAGCCTTTAATTTATGGTGTATTCGATGGCTGCAACGCCACTGTTATTGCATATGGAGCGAGAGGCAGTGGTAAAACTAGTCTGATTCAGGGATCATGTGAGAAACAAGGCATTGCATCATTAGCCATGACTGAGTTTCTTCAGTTGGCTGAAGAAAAAGGGAAATTAGTTTCTTTATCTTACTATGAAGTCTGTCAAGAAAATGTTTATGATTTATTGGATTCAAAGCGGCCAGCAGTTCAGGTTCCAGTAAGATCTATGGCAGAATTTTACGATTTGTATTTGAGTGGGTGTGGTCCAAGTAAAACAACCCAAAAGATACCATCTCAACCCTCTAGTAGTAGAAGCCACAAGGGATTAATGTTGCATGTATCATCTCCAACTAGTGGAAGTTTGAAAAGTGATCATGTTGGCAAGATAAATTTTGTTGATCTGGCAGGTTATGAGGATGCTAGAAGAAAAAGTGTTGATAATTCCAATCTTATTGAGAGTAATAAAATTAACAAGCCCATCTATGCTGTATTGAAGGTGGTATCTGCTTTAAATGCTCATGAAATTCATGTACCTTACCGTGAAAGCAAACTTACACGTATGTTACAAGATACCCTAGGAGGGCCAAACAAAATTTTGATGCTCACTTGCTTGAACCCGTATTTTTGTCAAGACTCGATCTATATGGCAAGCTTAGTTGCTCGCTCTTGTCGAAGAACCAATCACACTGTCTCAGACTCTAATAAGAAGACTAAAAGTATGACAAGACCATTTGTATCTTCTTCACTAAAGTACCAAATACCCAAGAGTGGTTCTACTGCTGCAAAGGCAAAATCTGGTTTCAAAGTGCATCTTCGAGAGGGGAAAGCGGTGAACATGAATTCTTCAATCAAAGGAAGGAAACTATTTGATGAAGCAAGTCATTTGAAAAAAATTGAGAAGGAACCTACTCAAGTAGCAACTTCAGATAGAGGCGAAAGCACAGTCTCTATTAAGGATATCTATGTTACTGATGGTCCGAGTGAACTTACTGCTACAACCACTGAGGACGTAAGAGGATTGGTTTTGCTTAAAGAGGATGAGGAAAACAAGAGTTTACCCATAAAATTCAATGGCCGTGATGGCAAAGGAACTCCTAGCATTGATAATGGCATGGAAGTGTCGTCTTATGTGGAAGAAGAGAAGGAAAACATGAATGCGTCGATTCCTGATGACAAATCTCCACCAATAAGTGTGAGACTACAAGAATTGTCAAACAGTTTGAAATCACTTTGTTCTTCAACTCCACTATGCATAAAGATCTCCAATGAGAATGATCCTACCTCTACAACAATACCTTCTCCAGATAAGACCTCACTTCCAATTTCTACTCAAATTGTGGAGCCGCAAACCCCAGTTACAAAACAATGCACCAGAGTTAATGATGGATTGGAGATTTCAAATTTCAATAGCCCTTGGGAAACCTTGAGTATTCGAAGTTCTGGTGTAAAGAATTCTCTTGTTGATGCACATCTCAGGTTCTTTAACACAGCCAGCAAGGATGAACTAAAGAGACTAAAGGGAATCGGGGAGAAGAGAGCAACCTACATAATTGAACGCCGTGAAGAATCTCCAATGCCTTTCAAAAGTCTTGATGATTTGGAAGATATTGGACTTTCTGCAAAGCAGATTAAAGGTTTGATGATAAAAGGAGCCGGAGAGCTGTTCAACTAG 1998 39.84 MASDSKEPIEQAKIGMHLGMRLKSDRKVRVVAKVRGFTGLEGGDSTSSCICVNNPSGEGSEAVIISFGDQSLSHKDSYEFDYCYEQNQENDVIFSREVKPLIYGVFDGCNATVIAYGARGSGKTSLIQGSCEKQGIASLAMTEFLQLAEEKGKLVSLSYYEVCQENVYDLLDSKRPAVQVPVRSMAEFYDLYLSGCGPSKTTQKIPSQPSSSRSHKGLMLHVSSPTSGSLKSDHVGKINFVDLAGYEDARRKSVDNSNLIESNKINKPIYAVLKVVSALNAHEIHVPYRESKLTRMLQDTLGGPNKILMLTCLNPYFCQDSIYMASLVARSCRRTNHTVSDSNKKTKSMTRPFVSSSLKYQIPKSGSTAAKAKSGFKVHLREGKAVNMNSSIKGRKLFDEASHLKKIEKEPTQVATSDRGESTVSIKDIYVTDGPSELTATTTEDVRGLVLLKEDEENKSLPIKFNGRDGKGTPSIDNGMEVSSYVEEEKENMNASIPDDKSPPISVRLQELSNSLKSLCSSTPLCIKISNENDPTSTTIPSPDKTSLPISTQIVEPQTPVTKQCTRVNDGLEISNFNSPWETLSIRSSGVKNSLVDAHLRFFNTASKDELKRLKGIGEKRATYIIERREESPMPFKSLDDLEDIGLSAKQIKGLMIKGAGELFN 665
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3743178 3747306 + Conep05aG0090200.1 Cone5ag0876 437894

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0876 665 PRINTS Kinesin heavy chain signature 108 129 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone5ag0876 665 PRINTS Kinesin heavy chain signature 205 222 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone5ag0876 665 PRINTS Kinesin heavy chain signature 286 307 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone5ag0876 665 PRINTS Kinesin heavy chain signature 237 255 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone5ag0876 665 SMART kinesin_4 25 335 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone5ag0876 665 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 21 318 IPR027417 -
Cone5ag0876 665 SUPERFAMILY RuvA domain 2-like 600 650 IPR010994 -
Cone5ag0876 665 Gene3D Kinesin motor domain 16 327 IPR036961 -
Cone5ag0876 665 ProSiteProfiles Kinesin motor domain profile. 27 338 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone5ag0876 665 Gene3D - 592 661 - -
Cone5ag0876 665 Pfam Helix-hairpin-helix motif 604 645 - -
Cone5ag0876 665 PANTHER KINESIN-RELATED 27 451 IPR027640 GO:0003777(PANTHER)|GO:0003777(InterPro)|GO:0005871(PANTHER)|GO:0005874(PANTHER)|GO:0007018(InterPro)|GO:0007018(PANTHER)|GO:0008017(PANTHER)|GO:0008574(PANTHER)|GO:0016887(PANTHER)
Cone5ag0876 665 Pfam Kinesin motor domain 40 316 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone5ag0876 665 FunFam Kinesin-like protein KIN-10C 589 663 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0876 K10403 - - mdm:103445183 574.318
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag0876 Cone-Chr5:3743178 Cone3ag0775 Cone-Chr3:3989706 2.66E-28 dispersed
Cone1ag1166 Cone-Chr1:55753201 Cone5ag0876 Cone-Chr5:3743178 0 wgd
Cone13ag1170 Cone-Chr13:9158072 Cone5ag0876 Cone-Chr5:3743178 2.73E-24 wgd
Cone5ag0876 Cone-Chr5:3743178 Cone8ag0301 Cone-Chr8:1741996 7.10E-25 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g714 . Blo15g00172 . . . Bpe07g00933 . . . . . Cma15g01088 . Car15g01000 . . . . . . . . . . Cla01g00444 Cam01g0467 Cec01g0456 Cco01g0478 Clacu01g0466 Cmu01g0444 Cre09g2068 Cone1ag1166 Cone5ag0876 . . . Csa05g00279 Chy09g01230 . . . Bda06g00688 . . . . Bma12g01117 . . Cmo15g01148 . . . . . Cpe13g00262 Bhi12g00497 . . . . . Lcy12g0037 . . . . . . . . . . Cme09g01562
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009133 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 34