Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0879 ATGAAGGCTTATGTCTGGCTTCAAACCGCTGATGGTTCAATCCAACAAGTAGAAGAAGAGGTTGCTATGTTTTGCCCTGTTATATGCCGAGAAATACTTCAATCAGGAATGGGGTCTTCCAAAAACTATGCTATATCTCTTCCACAACGAGTGAATCCTGCTACCTTGGGCTTGATACTTGATTATTGTCGGTTTCACCAAGCACCGGGACGCTCTAACAAGGAGCGCAAAATATTCGATGAGAAATTTATTCGGATTGATACAAAGAGGTTATGTGAGTTGACATCTGCTGCTGATAGCCTCCAGTTGAAGCCTTTGGTTGATCAGACCAGCCGAGCACTTGCTCGAATTATTGAAGGAAAAACTCCTGAGGAGATTCGTGAGACCTTTCATCTGCCTGATGATCTTACAGAGGAGGAGAAGTTGGAGCCGCTGAAAAATATAACTGATGATCCACGTATCAGGCTTCTAAATAGGTTATATGCAAGAAGGAGAAAAGAATTAAAAGAAAGAGAGAAGTTGAAGAACGTTGAGATTGAGGAAGAGCATGTGGATGAGCGCTCAGTTGATGACCTTCTGTCATTTATAAACAGTGGAGACAGAGGTTCAAAAGCAGTGAGAGCCAATACGAGTAAAAAGAAAAATCAGAAAAGAAAAGATCAAATGAAGGATTACTCAAATAATGTGAACGGAGAACATAATAAGGGACTGGATGCTTTTTCTTCTGCTTGTCATAATGGCAACAAAGGAAAAGTTTTAGGGGGATCCCACAATAAAAGTTCCAAGTTACAAGATGCTGGAGCTGTTAATTTTTCGCCAAAGCTTGAGTTTGATGATGGTGATATGGATGATGACTTAGATCCTGCAGTGAAGGAGGAACTTGACAGGGAAGTGGAGGATTTTGCACGAAGATTAAACTCAGACTGGCCTGAAAGAATGCAGGAAATCCTTTCTCTCGGTCAGGAAAGACGGCTTGTTCCAATATCCATCAACAGCAATGGCTCCTCATGA 1011 41.54 MKAYVWLQTADGSIQQVEEEVAMFCPVICREILQSGMGSSKNYAISLPQRVNPATLGLILDYCRFHQAPGRSNKERKIFDEKFIRIDTKRLCELTSAADSLQLKPLVDQTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLKNITDDPRIRLLNRLYARRRKELKEREKLKNVEIEEEHVDERSVDDLLSFINSGDRGSKAVRANTSKKKNQKRKDQMKDYSNNVNGEHNKGLDAFSSACHNGNKGKVLGGSHNKSSKLQDAGAVNFSPKLEFDDGDMDDDLDPAVKEELDREVEDFARRLNSDWPERMQEILSLGQERRLVPISINSNGSS 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3761916 3765865 - Conep05aG0090500.1 Cone5ag0879 437897

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0879 336 Gene3D Potassium Channel Kv1.1; Chain A 1 148 IPR011333 -
Cone5ag0879 336 SUPERFAMILY POZ domain 4 67 IPR011333 -
Cone5ag0879 336 Pfam Skp1 family, dimerisation domain 104 142 IPR016072 GO:0006511(InterPro)
Cone5ag0879 336 SUPERFAMILY Skp1 dimerisation domain-like 79 147 IPR036296 GO:0006511(InterPro)
Cone5ag0879 336 PANTHER SKP1 5 141 IPR016897 GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0006511(InterPro)|GO:0031146(PANTHER)|GO:0097602(PANTHER)
Cone5ag0879 336 Coils Coil 157 177 - -
Cone5ag0879 336 FunFam SKP1-like protein 21 isoform X1 1 149 - -
Cone5ag0879 336 MobiDBLite consensus disorder prediction 201 236 - -
Cone5ag0879 336 SMART skp1_3 2 103 IPR001232 GO:0006511(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0879 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1171 Cone-Chr1:55769733 Cone5ag0879 Cone-Chr5:3761916 6.94E-228 wgd
Cone14ag0074 Cone-Chr14:396164 Cone5ag0879 Cone-Chr5:3761916 1.13E-159 wgd
Cone15ag0077 Cone-Chr15:420408 Cone5ag0879 Cone-Chr5:3761916 3.04E-146 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g719 Blo06g01134 . . . . Bpe07g00932 . . . . . Cma15g01085 . Car15g00998 . . . . . . . . . . . . . . . . . Cone1ag1171 Cone5ag0879 Cone14ag0074 Cone15ag0077 . . . . . . Bda06g00689 Bda15g00715 . Bpe12g00438 Bma08g00296 Bma12g01116 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003335 2 5 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 1 1 1 1 7 3 2 49