Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0881 ATGCCTTCATGGTGGGGGAAATCATCATCCAAAGAAGTGAAGAAGAAAGCAGGTAAACAAAGCTTCATCAACACAATACACCGTAAACTTAAAAGCCCATCTGAAGGTAAAGTAAACAGTCAATCAGGTGGAGCCCAGAGACATTGCAGTGACACTTTTTCTGAGAAGGGGAATTCAAGATCACCTTCTCCTTCCAAAAAAGTTTCAAGATGTCAAAGCTTTGTCGACCGGCCCCATGCTCAACCGCTTCCCCTTCCAGGTCGACGCCCAGCCAGTGTTGTCCGAACAGATTCTGGAATCAACATATCAACAAAACCCAGATCAGAAAAAGGGTCTAAGACATCATCATTTCTTCTTCCTAGGCCTGCATGCATTCGTCGCAGGTCAAACCCGGCAGATTTAGATGGAGATTTGGTCAACGATTCGATCTCTAGTGAGGGATCGATTGAGAGCGATGATGCTGCTGATTCACGTCATCAAAGTCCTCGGGCAACTGACTATGATATTGGTCCCAGAACTGCAGCCGGAAGCCCATCCAGTGTGATTCCAAAGGATCAATCTTCCCCTATCACCCAAATAAGCTCAAGGGAGGCCAAAAAACCAGCAAACTTATCTTTAGGCATTCGTATATCCTCAACATCACCTAAAAGGAGGCCTTTAAGCAGTCGTGTGACAAATCTTCAAGTTCCTCCACCTGGGGCTTTCTTTAGTGCTCCAGACAGTTCCATGTCAAGTCCTTCTAGAAGCCCTATGAGGGCATTTAGCACTGAGCAAGTTATGAACACAGCTTTCTGGGCAGGGAAGCCTTATCCAGATGTCGCTTTAACTGGGTCGGGCCACTGCTCCAGTCCTGGTTCGGGCCACAATTCGGGTCATAATTCAATGGGTGGTGATTTGTCTGGCCAGTTGTTTTGGCAGCAACAGAGCAGGGGAAGCCCCGAATATTCTCCGGTTCCTAGTCCAAGAATGACTAGCCCGGGTCCTAGCTCGAGAATTCATAGTGGTGCAGTCACGCCTATACATCCTAGAGCCGGAGGGGGACCAAATGAGTCGCAGACAATTTGGCCCGAGGAGAAACAGAGTCACAGATTGCCTCTTCCTCCTGTATCAATCTCTAATCCTTCACCATTTTCACATTCTAATTCAGCTGTGGCTTCTCCTTCTGTACCAAGAAGTCCGGGAAGGGCAGAAACTCCTCCTTTGAGCCCTGGATCACGCTGGAAAAGGGGGAAACTACTGGGTAGGGGCACTTTTGGACATGTATATGTTGGCTTTAATAGTGAAAGCGGTGAAATGTGCGCTATGAAAGAAGTAACGTTATTTTCAGATGATACAAAGTCGAAGGAAAGTGCCAAGCAATTAATGCAGGAAATCACTTTGTTAAGCCGATTACGACATCCAAATATTGTACAGTATTATGGTTCGGAATCGGTGGACGACAAACTATATATATACCTGGAGTATGTATCTGGTGGCTCCATATATAAACTTCTTCAAGAATATGGACTATTCGGCGAACTAGCAATCCGAAGTTATACTCAGCAAATACTATCAGGGCTTGCATATTTACACGCAAAAAATACCATCCATAGGGATATTAAAGGAGCAAATATACTCGTGGACCCTAATGGCCGTGTTAAGTTGGCAGACTTTGGGATGGCAAAGCATATTACGGGGCAGTCGTGTCCATTGTCATTCAAAGGTAGCCCTTATTGGATGGCACCGGAGGTTATAAAGAACTCAAGCGGCTGCAACCTTGCTGTGGATATTTGGAGTCTAGGATGCACTGTTTTGGAGATGGCTACCACCAAGCCGCCTTGGAGCCAGTATGAAGGCGTTGCTGCGATGTTTAAAATTGGCAATAGCAAAGACCTCCCAACGATTCCAGGTAACCTGTCAGAGGACGGGAAAAATTTTGTGAGGCTATGTTTGCAAAGGAATCCGCTTCATCGTCCTACAGCTCTTCAACTTTTGGACCACCCCTTTGTTAAATATGCTGCTCCCCTTGAAAGGCCCATTTTGAGCCCCGATCCACCTTCAGATCCAACCCCTACTGGGCTCACAAATGGAGTGAAAGCAATGGGCATTGGGCAAGTGAGCAATCATACCACATTGGACTCGGATCGACTTGAAGTCCATTCATCTAGAGTCTCCAAAACTGCTCTCCATTCCAGTGAAATCCAAACTCCAAGAAACATATCATGTCCTGTTTCACCCATAGGGAGCCCTCTATTGCATTCCAGGTCACCACAACATCCCAATGGAAGAATGTCTCCTTCTCTTATATCAAGCCCTCGAACCACTTCCGGATCATCTACGCCTCTGACTGGCGCTAGTGGGGCCCTCCCATATAACCACCTAAAACAAAGCGGATACTTGCAAGAGGGTTTTTCAAGCTTGCCCAAGTCCTCAAATAATGGTCTATACACCAATGGCTCCAGCTCTTATCAAGACTCTAGCCCCGGTATGTTTCGAGGAATGCAGGCTGGTGGTGGGCCCCACATCTTCTCTGAACACTTCTATGACGGGCAATCGGTCTTGGCTGATCGGGTTTCACGGCAGCTTCTGAGGGATCATGTCAAGACAAACCCGTCTTTGGATTTGAGTACTAGCTCTTCTCTGCCTAGTCGAGCAAGTGGTATCTAA 2646 46.83 MPSWWGKSSSKEVKKKAGKQSFINTIHRKLKSPSEGKVNSQSGGAQRHCSDTFSEKGNSRSPSPSKKVSRCQSFVDRPHAQPLPLPGRRPASVVRTDSGINISTKPRSEKGSKTSSFLLPRPACIRRRSNPADLDGDLVNDSISSEGSIESDDAADSRHQSPRATDYDIGPRTAAGSPSSVIPKDQSSPITQISSREAKKPANLSLGIRISSTSPKRRPLSSRVTNLQVPPPGAFFSAPDSSMSSPSRSPMRAFSTEQVMNTAFWAGKPYPDVALTGSGHCSSPGSGHNSGHNSMGGDLSGQLFWQQQSRGSPEYSPVPSPRMTSPGPSSRIHSGAVTPIHPRAGGGPNESQTIWPEEKQSHRLPLPPVSISNPSPFSHSNSAVASPSVPRSPGRAETPPLSPGSRWKRGKLLGRGTFGHVYVGFNSESGEMCAMKEVTLFSDDTKSKESAKQLMQEITLLSRLRHPNIVQYYGSESVDDKLYIYLEYVSGGSIYKLLQEYGLFGELAIRSYTQQILSGLAYLHAKNTIHRDIKGANILVDPNGRVKLADFGMAKHITGQSCPLSFKGSPYWMAPEVIKNSSGCNLAVDIWSLGCTVLEMATTKPPWSQYEGVAAMFKIGNSKDLPTIPGNLSEDGKNFVRLCLQRNPLHRPTALQLLDHPFVKYAAPLERPILSPDPPSDPTPTGLTNGVKAMGIGQVSNHTTLDSDRLEVHSSRVSKTALHSSEIQTPRNISCPVSPIGSPLLHSRSPQHPNGRMSPSLISSPRTTSGSSTPLTGASGALPYNHLKQSGYLQEGFSSLPKSSNNGLYTNGSSSYQDSSPGMFRGMQAGGGPHIFSEHFYDGQSVLADRVSRQLLRDHVKTNPSLDLSTSSSLPSRASGI 881
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3773994 3779834 - Conep05aG0090700.1 Cone5ag0881 437899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0881 881 MobiDBLite consensus disorder prediction 151 165 - -
Cone5ag0881 881 MobiDBLite consensus disorder prediction 721 782 - -
Cone5ag0881 881 MobiDBLite consensus disorder prediction 277 408 - -
Cone5ag0881 881 MobiDBLite consensus disorder prediction 179 199 - -
Cone5ag0881 881 ProSitePatterns Protein kinases ATP-binding region signature. 413 436 IPR017441 GO:0005524(InterPro)
Cone5ag0881 881 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 48 667 IPR050538 -
Cone5ag0881 881 ProSiteProfiles Protein kinase domain profile. 407 663 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag0881 881 Gene3D Transferase(Phosphotransferase) domain 1 405 675 - -
Cone5ag0881 881 MobiDBLite consensus disorder prediction 721 736 - -
Cone5ag0881 881 MobiDBLite consensus disorder prediction 206 228 - -
Cone5ag0881 881 MobiDBLite consensus disorder prediction 35 70 - -
Cone5ag0881 881 CDD STKc_MEKK1_plant 406 663 - -
Cone5ag0881 881 MobiDBLite consensus disorder prediction 238 253 - -
Cone5ag0881 881 SMART serkin_6 407 663 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag0881 881 MobiDBLite consensus disorder prediction 1 253 - -
Cone5ag0881 881 Pfam Protein kinase domain 408 663 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag0881 881 SUPERFAMILY Protein kinase-like (PK-like) 405 736 IPR011009 -
Cone5ag0881 881 MobiDBLite consensus disorder prediction 744 779 - -
Cone5ag0881 881 MobiDBLite consensus disorder prediction 373 388 - -
Cone5ag0881 881 MobiDBLite consensus disorder prediction 279 315 - -
Cone5ag0881 881 FunFam Mitogen-activated protein kinase kinase kinase 405 685 - -
Cone5ag0881 881 MobiDBLite consensus disorder prediction 96 115 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag0881 Cone-Chr5:3773994 Cone8ag0019 Cone-Chr8:140232 6.16E-138 dispersed
Cone1ag1174 Cone-Chr1:55782217 Cone5ag0881 Cone-Chr5:3773994 0 wgd
Cone14ag0072 Cone-Chr14:390001 Cone5ag0881 Cone-Chr5:3773994 0 wgd
Cone15ag0075 Cone-Chr15:412549 Cone5ag0881 Cone-Chr5:3773994 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82852 PF00999 Na_H_Exchanger 2.00E-25 CL0064 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0881 K20717 - mdm:103442920 1247.26