Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0890 ATGGGCTTCAAACCGACAAACAAATTCTCTGATTCTACTTTTTCGTTACTTTCGCGGGAAATTTTCCCCGAGATGGATTCTCCGGCTGCAACTCTGTCCAATTCCCTACATTTTCCGTCCAATTTTCTCGGGAAGCTTAATCTGCCTCACTTTCTGTTACTTCCCAGCAAGATTCATCTTCGTAGCTCGAACAGTCAAGTACAGACCCTTGCCTCGACCTCTACTGAGAGCAATGGAGTCACGGTCGTCTCGCCGGAATGTCAGAGCGGTCAAGGACCCCTCGCATCGGAAAAATGCAGGGGATGGATTCGTTTCGTCGGAATTGGAGGTTGCGGATTATCTGCCTTAGCCATGCTTGCACTCAAACAGGGATATGAAGTTAGTGGGTCAGAAATTAAGTGGAGTAGCTTCATGGATGGACTGCAGAGAGCTGGGGCGACTTTGAATATCGGTCATTCCGTGTGGAATATACAGAAAAACACTGGATTTCTTTCTCCTGATGCCGTTGTAATTTCAAGTGCCATTCCCCAAGATAATGAGGAAGTTGAATTTGCCAATTCCATTGGAGTACCTGTATATACGCGACGCCTTTGGTTGGAAAAGATAACTACGTGCTACAATCTTATTGCTGTGAGTGGATCCCATGGGAAGAGTACTACAACAAGTATGCTTGCTTATGCTTTAAAGGAAATGGGAGATGATTTAACAGCTTTGGTAGGAGCACATGTTCCTCAGTTTCCACATGGGAATATCATCTCAGGCAGTGGTAAAAATTTTGTCCTCGAGGCTGATGAATATGATGGTTGCTTTCTGGACCTATCACCTTATATAGCTGTCATATTGAATCTGGACTGGGAGCATGTTGATATCTTTCAAAATGAGGAGGCAGTAAAATGCACTTTCAGGAGATTCTTGGATCAAATAAAGGTTGGAGGGTATCTAATTTTATGTGGCGATAGTCCAGGTGCATATTCCTTGCTAGATCACACAAAACAAACAGCTAGCTATAGAACAACAACCTATGGACTCTCCAACAATAATGAATGGCATGCATCTTCAATTCATCCAAACTCAATTGGGGGTAGCAATTATACCCTGTGTTACAACGGGGATCCAGTGATAGACATCAGTTTACGTATTCCAGGAGCTCACAATGTCCTCAATTCCTTAGCAGTGGTTATTACTATAATAACACTACTTGGAGATCAAATTCCGTTCAATGAAATTATTAAGGAAGCGAGGTTGCACTTGAACAATTTCATTGGTGTTTCCAGACGTTTTGAGATGATAGGTACAGTTTGTGGGTGCCATGTATATGATGACTATGCACATCATCCAACAGAGGTCCGTTCAGTTCTTCAAGCAGCTTGTCAAAAGTTCCCATCTAAGCATCTTCTCGCAGTATTTCAGCCTCATACTTACAGTCGTTTAGCAGCATTTAAGGAAGATTTTGCTGATGCACTTAGTTTGGCACATCAAGTTGTGGTTACAGAGGTTTATGCTGCAAGAGAAACAGATGTTTGGAATGTTAGTGGGATAGATTTAGCTCTCTCAATTATTGGACTGCCAGTTGAATATATACCCTCCCTGGGAGATGTAGTTAACAAGTTGGTGTCACAAATATCATGTGACCCCTATCGCGAGATCATTGTCTTAACACTTGGTGCAGGCGATGTCACTAGTGTGGGTCCCGATCTGCTCCATAGATTGCGACAAGTTTTACACAACTAA 1731 42.75 MGFKPTNKFSDSTFSLLSREIFPEMDSPAATLSNSLHFPSNFLGKLNLPHFLLLPSKIHLRSSNSQVQTLASTSTESNGVTVVSPECQSGQGPLASEKCRGWIRFVGIGGCGLSALAMLALKQGYEVSGSEIKWSSFMDGLQRAGATLNIGHSVWNIQKNTGFLSPDAVVISSAIPQDNEEVEFANSIGVPVYTRRLWLEKITTCYNLIAVSGSHGKSTTTSMLAYALKEMGDDLTALVGAHVPQFPHGNIISGSGKNFVLEADEYDGCFLDLSPYIAVILNLDWEHVDIFQNEEAVKCTFRRFLDQIKVGGYLILCGDSPGAYSLLDHTKQTASYRTTTYGLSNNNEWHASSIHPNSIGGSNYTLCYNGDPVIDISLRIPGAHNVLNSLAVVITIITLLGDQIPFNEIIKEARLHLNNFIGVSRRFEMIGTVCGCHVYDDYAHHPTEVRSVLQAACQKFPSKHLLAVFQPHTYSRLAAFKEDFADALSLAHQVVVTEVYAARETDVWNVSGIDLALSIIGLPVEYIPSLGDVVNKLVSQISCDPYREIIVLTLGAGDVTSVGPDLLHRLRQVLHN 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3826495 3830277 - Conep05aG0091600.1 Cone5ag0890 437908

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0890 576 Gene3D - 422 575 IPR036615 GO:0009058(InterPro)|GO:0016881(InterPro)
Cone5ag0890 576 SUPERFAMILY MurD-like peptide ligases, peptide-binding domain 422 568 IPR036615 GO:0009058(InterPro)|GO:0016881(InterPro)
Cone5ag0890 576 Gene3D - 197 421 IPR036565 GO:0005524(InterPro)|GO:0009058(InterPro)
Cone5ag0890 576 SUPERFAMILY MurD-like peptide ligases, catalytic domain 196 396 IPR036565 GO:0005524(InterPro)|GO:0009058(InterPro)
Cone5ag0890 576 Hamap UDP-N-acetylmuramate--L-alanine ligase [murC]. 100 572 IPR005758 GO:0008763(InterPro)
Cone5ag0890 576 Pfam Mur ligase, glutamate ligase domain 425 557 IPR004101 GO:0009058(InterPro)|GO:0016881(InterPro)
Cone5ag0890 576 NCBIfam UDP-N-acetylmuramate--L-alanine ligase 103 565 IPR005758 GO:0008763(InterPro)
Cone5ag0890 576 SUPERFAMILY MurCD N-terminal domain 103 193 - -
Cone5ag0890 576 PANTHER UDP-N-ACETYLMURAMATE--L-ALANINE LIGASE-RELATED 101 575 IPR050061 -
Cone5ag0890 576 Pfam Mur ligase middle domain 211 394 IPR013221 GO:0005524(InterPro)|GO:0009058(InterPro)|GO:0016881(InterPro)
Cone5ag0890 576 Pfam Mur ligase family, catalytic domain 103 203 IPR000713 GO:0009058(InterPro)|GO:0016881(InterPro)
Cone5ag0890 576 Gene3D - 102 193 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0890 K01924 - - vvi:100855090 686.411
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1190 Cone-Chr1:55850022 Cone5ag0890 Cone-Chr5:3826495 2.06E-170 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g753 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone1ag1190 Cone5ag0890 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0023664 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 3