Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0899 ATGATCAAGATTGAAACTTCAATATTGTCATGCTCTGCTCTTGGAAATTTAGATCTTGGAGCTTGTATCCATGGTTATATGCTGAAGGCTGGGTTTGAGTCAAAGCCAATTCTCGGAAGCACTTTGATTGATTTCTACGCGAAAAGTGACTGCCATGAAGAAGCTTATAGGTATTTTATGAGCATGGATAATGGTGATACTGTTTCTTGGACCACCATGATTTCTTCACTGGTTCAAGCCCGGAAATGGAGAGAGGCTTTACAGCTTTACATCTCTATGATTCAAAATGAGGTCTTCCCGAACGAATTCACTTTCGTGAAACTTTTAGCCACAGCAAGTTTTATCGGTTTGAAATACGGGAAATTACTTCACACCCATTTGATTATAATGGGAATTAATTTGAATGTGGTAATGAAAACAGCGCTTGTTGAGATGTACATGGATTACTCCATGTTAGAAGATGCTATCAAGGTATCAAACCAGACACCAGAGTATGATGTCTTCTTATGGACCTCTATTATTTCTGGGTTTACCAAGAATTCAAAGGTCAGGGAAGCTATTTCAGCATTAAATGCAATGAAACTTTCTCAAATTGAACCTAATAATTTCACGTATTCTAGTATACTAAGTGGTTGCACAGCTATATCAGCATTGAAGTTAGGTCAACAGATTCATTTACATGTGATTTTGGCCGGGTTAGAAGCTGATATCTGTGTGGGAAGTGCACTAATTGATATGTACATGAAAAGCTCAAACCTCACAGAAGATGGTTTAAGAGTATTTAACAAAATAACCGAACCAAATGTCATTTGCTGGACTTCTTTGATTTCGGGTCTAGCCGAGCATGGTTTTGAAGAAGATTGTATCAAGCTCTTTTACGAGATGCAAGCAAAAGGAGTCCAGCCCAATTCCTTTACTCTCTCCACTATCCTTAGAACCTGCAAATCTCCTAGTCAAGCATTAAAGTTCCATGGACATATAATGAAAAGTAGTGGAGTAAACAAAGATATTGTTGTTTTGAATGCTCTTATAGATTCTTATGCTCGTTTGGAAATGATGGACTGTGCTCAGAAAGTTATTACCACAATGAGCTGTAGAGATGCAATCACATATACAACTTTAGCCACGAGAATGAATCAGATGGGTCATCATGAAACGGCCTTAAACATCTTCATGGACATGAGTAATGATGATATTAAGATGGATGGATTTAGCTTGGCAAGTTTCTTATCTGCTTCAGCTAACCTAGGCACATTGGAAACAGGTAAGCAACTTCACTCTCATTCTCTAAAATCTGGGTTAGATAGCTACATTTCGGTTAGAAACAGTCTAGTTGACTTGTACGGGAAGTTTGGATGTATGAATGATGCGTATCGGGCCTTTTGGGAAATAGCCGAGCCTGGTGTTTTTTCCTGGAACGGGCTGATATCAAGCCTGGCAGTCAATGGGTATATTTCGTCTGCTCTATCTGCCTTTGATGACATGAGATTAGCTGGTTTCGGGCCAGATTCTGTTACATTTCAATTAGTCCTTTTTGCTTGTAGCCAAGTTGGTTTGGTTGATTTGGGTTATGAATATTTCAAATCTATGAGAGAAGTTTATGATATAACCCCTGAATTGGATCATTATGTTTGTTTAGTTGATCTCCTTGGCCGAGCTGATCGGCTAGAGGAGGCAGTAGAAGTGGTTGGGTGCATGCCTTTTAAGGCAAATGCTTTGATGTACAAAACGTTGTTGGGTGCTTGCAAATTACATGGAAATATGCTTTTAGGGGAAGATATGGCAAGGCGAGGGATTGAACTTGATCCGTCAGATCCGTCTTTCTATGCAATGCTAGCGAACTTGTACGATGAATCTGGACGGTCCGATTTGAGTGAGAAAACTCGTAAGCTAATGGCCGAGAGAGGGTTGAGGAAGAACAATCCGAGTGAGAGCTGGATAGAGATACGAAACAACGTGCATGTCTTCATTAATGGAGATAGATCACATTTGTATATGGAGGAAATCCAAGGGAAACTGAGATCCCTTATAGCTCGGTTCAAGAGCATGGGGTACTTGTATAGTGAGAATGGGAATTCGTCTTATCACTGTGAGAAGCTAGCCGTTGCATTTGGTCTAGTGACTACAGTATGGAGAGCTCCAATACGTGTAATGAAAAATATACGCATTTGCAGAGAATGCCATGAGTTTATGATTCTAGCGACAAAGGTAGAAGATAGGGAGATCATTGTAAGGGACCCGAACCGACTTCATGTGTTCAAGAACGGGCAGTGTTCGTGTGGGGCCCGCTTGTAA 2295 40.26 MIKIETSILSCSALGNLDLGACIHGYMLKAGFESKPILGSTLIDFYAKSDCHEEAYRYFMSMDNGDTVSWTTMISSLVQARKWREALQLYISMIQNEVFPNEFTFVKLLATASFIGLKYGKLLHTHLIIMGINLNVVMKTALVEMYMDYSMLEDAIKVSNQTPEYDVFLWTSIISGFTKNSKVREAISALNAMKLSQIEPNNFTYSSILSGCTAISALKLGQQIHLHVILAGLEADICVGSALIDMYMKSSNLTEDGLRVFNKITEPNVICWTSLISGLAEHGFEEDCIKLFYEMQAKGVQPNSFTLSTILRTCKSPSQALKFHGHIMKSSGVNKDIVVLNALIDSYARLEMMDCAQKVITTMSCRDAITYTTLATRMNQMGHHETALNIFMDMSNDDIKMDGFSLASFLSASANLGTLETGKQLHSHSLKSGLDSYISVRNSLVDLYGKFGCMNDAYRAFWEIAEPGVFSWNGLISSLAVNGYISSALSAFDDMRLAGFGPDSVTFQLVLFACSQVGLVDLGYEYFKSMREVYDITPELDHYVCLVDLLGRADRLEEAVEVVGCMPFKANALMYKTLLGACKLHGNMLLGEDMARRGIELDPSDPSFYAMLANLYDESGRSDLSEKTRKLMAERGLRKNNPSESWIEIRNNVHVFINGDRSHLYMEEIQGKLRSLIARFKSMGYLYSENGNSSYHCEKLAVAFGLVTTVWRAPIRVMKNIRICRECHEFMILATKVEDREIIVRDPNRLHVFKNGQCSCGARL 764
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3853950 3856734 - Conep05aG0092500.1 Cone5ag0899 437917

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0899 764 Gene3D Tetratricopeptide repeat domain 4 118 IPR011990 GO:0005515(InterPro)
Cone5ag0899 764 Gene3D Tetratricopeptide repeat domain 441 697 IPR011990 GO:0005515(InterPro)
Cone5ag0899 764 Pfam PPR repeat 442 465 IPR002885 -
Cone5ag0899 764 Pfam PPR repeat 40 62 IPR002885 -
Cone5ag0899 764 Pfam PPR repeat 543 566 IPR002885 -
Cone5ag0899 764 Pfam PPR repeat 338 363 IPR002885 -
Cone5ag0899 764 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 220 319 - -
Cone5ag0899 764 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 439 666 - -
Cone5ag0899 764 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 268 302 IPR002885 -
Cone5ag0899 764 Gene3D Tetratricopeptide repeat domain 218 316 IPR011990 GO:0005515(InterPro)
Cone5ag0899 764 Gene3D Tetratricopeptide repeat domain 317 430 IPR011990 GO:0005515(InterPro)
Cone5ag0899 764 Gene3D Tetratricopeptide repeat domain 120 217 IPR011990 GO:0005515(InterPro)
Cone5ag0899 764 FunFam Pentatricopeptide repeat-containing protein chloroplastic 320 434 - -
Cone5ag0899 764 Pfam DYW family of nucleic acid deaminases 695 762 IPR032867 GO:0008270(InterPro)
Cone5ag0899 764 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 66 100 IPR002885 -
Cone5ag0899 764 NCBIfam pentatricopeptide repeat 169 201 IPR002885 -
Cone5ag0899 764 NCBIfam pentatricopeptide repeat 68 102 IPR002885 -
Cone5ag0899 764 NCBIfam pentatricopeptide repeat 470 503 IPR002885 -
Cone5ag0899 764 NCBIfam pentatricopeptide repeat 270 303 IPR002885 -
Cone5ag0899 764 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 468 502 IPR002885 -
Cone5ag0899 764 PANTHER OS07G0578800 PROTEIN-RELATED 7 117 IPR045215 GO:0003723(PANTHER)|GO:0003723(InterPro)|GO:0009451(PANTHER)|GO:0009451(InterPro)|GO:0043231(PANTHER)
Cone5ag0899 764 Pfam E motif 585 648 IPR046848 -
Cone5ag0899 764 Pfam PPR repeat family 267 314 IPR002885 -
Cone5ag0899 764 Pfam PPR repeat family 166 212 IPR002885 -
Cone5ag0899 764 Pfam PPR repeat family 66 108 IPR002885 -
Cone5ag0899 764 Pfam PPR repeat family 467 514 IPR002885 -
Cone5ag0899 764 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 166 200 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0899 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag0899 Cone-Chr5:3853950 Cone7ag0729 Cone-Chr7:4415865 1.21E-132 dispersed
Cone5ag0897 Cone-Chr5:3851426 Cone5ag0899 Cone-Chr5:3853950 2.34E-12 proximal
Cone13ag1169 Cone-Chr13:9155767 Cone5ag0899 Cone-Chr5:3853950 5.62E-101 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g789 . . . . . . . . . Cmo18g01310 . . . . . . . Bhi01g01420 . . . . Mch10g0115 . . . . . . . . . Cone5ag0899 . . Lsi05g01181 . . . . . . . . . . . . . . . Cma18g01279 . Car18g01193 . . . . . . . . . Cla05g00927 . . . . . . . . . .