Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0927 ATGAGCATTACCCAATTCGCCATGGTTGAGGAATTGGCTTTTCTTGTTAGAGACAACCTTCGTAGTAAGCATCTTGTTCTCTCCATGGAAGAGGCGTTCGTTAACTATCTTCAGGACAATACCAGTTCCGAAGGGATCCTAGAGTTAGAACCGATGGACTCATACAATCGTCTTCTCTTGCATCGTCTTGCAGATATATTTGGATTTTCCCATGAATCCATTGGTGAAGGGAATGATCGGCATTTAGTTTTGGAGCAATGCCCAGAGACATCAATACCAGCCATTCTCGTGAGTGATATTTTGTGGCAATCTGATGAGCCACAAAACCCAGTGGTATCACACCAATTATTAAGAAGAGAAGAATCCTCTCCAGTGTTCAAGATAAAAACTCCATCGCTTCCAAATTCACTCGAGGAAAGAGAAGCAGCATATTTGGCTGCTCGGGATAGAATCTTTTCAATGGGTGACAACTTGAAAGAGCCTAATGAAAATAATGCCAAGCAGAAACCACGCACTGATCCCGTGGTCGCTCGTAGGATGATTGCTCATGCTTTGGGCCAAAAAATCAACCCATGCGATCAAGATGCTGATCTCAAGGATTGTAAAGAGCAAGAATTGAAACAGCAAATTGATGAATTGAATTTAAATTTTCGAGAGAAGGACATAATGGAGTCTGATTCTACAGCTCGGATTTCTCAATCAACCATCTTGATGTCGGCTCCACATAAAACAAACCCATCGCCAACTAGTGTAAGCCATTGTCCGGAAAGATCAATAGGAAGCAATTTTAGTAGTGGGAGGAATAACGAGCGTTTGAAAAGGGAACATTTAGGAGCTACAAAGAGGATCTTTGCTAATGCCTTAGGAATGCAGAATGGAAAGAGTACTAGTACTACTAATAGAGTTTCACTGGGGTAG 918 41.83 MSITQFAMVEELAFLVRDNLRSKHLVLSMEEAFVNYLQDNTSSEGILELEPMDSYNRLLLHRLADIFGFSHESIGEGNDRHLVLEQCPETSIPAILVSDILWQSDEPQNPVVSHQLLRREESSPVFKIKTPSLPNSLEEREAAYLAARDRIFSMGDNLKEPNENNAKQKPRTDPVVARRMIAHALGQKINPCDQDADLKDCKEQELKQQIDELNLNFREKDIMESDSTARISQSTILMSAPHKTNPSPTSVSHCPERSIGSNFSSGRNNERLKREHLGATKRIFANALGMQNGKSTSTTNRVSLG 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3971268 3974722 - Conep05aG0095300.1 Cone5ag0927 437945

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0927 305 Gene3D - 3 123 IPR036867 GO:0003676(InterPro)
Cone5ag0927 305 ProSiteProfiles R3H domain profile. 23 88 IPR001374 GO:0003676(InterPro)
Cone5ag0927 305 Pfam SUZ domain 125 154 IPR024771 -
Cone5ag0927 305 MobiDBLite consensus disorder prediction 239 267 - -
Cone5ag0927 305 SMART R3H_4 10 87 IPR001374 GO:0003676(InterPro)
Cone5ag0927 305 Pfam R3H domain 27 84 IPR001374 GO:0003676(InterPro)
Cone5ag0927 305 ProSiteProfiles SUZ domain profile. 91 156 IPR024771 -
Cone5ag0927 305 PANTHER CAMP-REGULATED PHOSPHOPROTEIN 21 RELATED R3H DOMAIN CONTAINING PROTEIN 9 267 IPR051937 -
Cone5ag0927 305 MobiDBLite consensus disorder prediction 239 270 - -
Cone5ag0927 305 CDD R3H_encore_like 22 78 - -
Cone5ag0927 305 Coils Coil 196 216 - -
Cone5ag0927 305 SUPERFAMILY R3H domain 15 119 IPR036867 GO:0003676(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0927 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g824 . . . . . . . . . . . . . . . Cpe07g00787 . . . . . . . . . . . . . . . Cone5ag0927 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008321 1 3 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 33