Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0928 ATGGGTTTTTATTCTTTTACCCCTGCAGTATCCCGAATTTACACTTGCTGCCACTGTGATGTTTTGAGCAGTTTGCTTTTTTTTCACTCTCCTGTGAGGAAAATCTTCGTTTTAAACCATTCTCCAGTCATGGAGCTGAAAAGGGTTTCCAATTTTTGCCCTATTAGAGCTCCTAAATTACATGTTATGCAACTGTTTTTCTTGTTGATGCTCTGCGTAAACCCTTCCCACTCTTTAAACCTTGACCCAGAAGACAAAACCTCTCTTTTATTGCTCAAATCTTGGTTCCAAGACCCTAACCAGAACTTGTCTACCTGGGTGGGTTCCAATTGCACTAACTGGACCGGAATCGCCTGCCAAAACCAGACTGGTAGAGTAGTTTCAATCAATCTGATTAACAGGAACTTGTCAGGCAAAATCCACCCCAGTTTGTGCAAGCTTATGTTTCTAGAAAACTTGGTTTTGTCACAAAATAACTTTACATGTCCCATTCCACGTTGCTTTGGATCTTTGCTTAGCCTCAAAACCATTGATCTTAGCCATAATCGGTTTCAAGGTGTAATTCCTGATACTTTGATGAGACTAAGGAACATAAAGGAGTTTGTTTTGACAGGTAACAAAGCTTTAGGGGGACCCATCCCCTATTGGATAGGTAATTTCTCATCTAAGCTTGAAAAGCTTGATCTTGGCTTTAATTCATTTAGTGGGGAACTGCCTGATAGCTTGTTATACTCAAAATCATTAAAGTATTTGGATCTTCAATTTAATTACTTATGGGGAAATCTTTGTGACTTTTATCAATCTTTAGTCTCCCTCAATCTTGGGTCCAATCAATTTTCTGGCACTTTACCTTGTTTCTCAGCTTCTGTTCAGTCTCTTACTGCTTTAAATTTAGCTAACAACTCCATTGTTGGAGGAATACCTACTTGCATTGCTTCACTTCGAGCTCTAGTACATCTTAATCTATCTTTCAATCACTTGGCTTACAAGATATCTCCTAGGCTTATATTTTCAGACAGGCTTCTTGTCTTGGACCTAAGTAACAATGATTTAGCGGGTCCTCTTCCTAGCAAGATTGCTCAAACCACGGAAAAATCCGGACTTGTTCTTCTTGACCTCTCTCATAATCATTTCTCTGGGGAAATCCCATCAAAGATAACAGAATTGAAAAGCTTGCAAGCATTGGTTCTTTCACACAATCTTCTCATGGGGGAAATTCCTCCTAGAATAGGAAACTTGACTTACCTCCAAGTGATTGATCTTTCATTCAACTCATTATCAGGATCGATTCCGTTGAATGTTGTTGGATGCTTTCAGCTCCTTGCTTTAATACTCAATGATAATAATCTTTCTGGTGAAATCCAGCCTGAGCTTGATGCATTAGATAGCTTGAAGATACTTGATATTAGCAACAATATGATTTTTGGGGAGGTCCCACTTACTCTTGCAGGATGTAAATCACTTGAGATAGTTGACTTTAGCTCCAACAATCTGTCCGGAACTTTGAATGATGCCATAACAAAATGGTCAAACCTTAGGTACCTTTCTCTGGCTTGGAATAAATTCAGTGGAAATCTGCCCGGTTGGCTATTCTCGTTTGAAGCAATTCAGCTATTGGATTTATCCGGGAACAAATTTTCGGGGTTCATACCGGAAGGAAACTTTAACATAAGCTTGAATTTCTACAACGGAGATATTGGAAGAATTTATAAAGACCCGTCTACTGAAAATCAAGTGTTGGACTTTAAGGTTTCTACATTTGTTGCTGATAGCAGTGAATTGAGTTTCAGTTACGACCTCTCTTCAGCTGTTGGAATTGATCTGTCAAGTAATGTTCTACATGGGACTATTCCGGATAGTCTATTTGCACTTAAGGGTATTCAAATTTTGAATCTTTCGCACAATGCTCTTGAAGGTGAGGTTCCGGGATTAGAGAACATGAAAAGATTAAGGGCCTTGGATTTGTCTTATAATTATTTGTCGGGTCAGATTCCAGGAAATATTTCTAGGCTTAAAGATCTTACACTTTTGGATTTGTCATATAACTGCTTATCTGGATCAGTGTCTAATGATGGGTATGGGAGATTTCCAGGTGCGTTTTTGGGGAATCCGGACTTGTGTGTGGAATCTTCTGATGGAAATAGTTGTGGTTCAAAGAATACTCCGGCTCTGCCTGGGAAGAAGTTTCAAGAAGAAATGATAGAGGGGCCGATATCTGTTTGGGTGTTCTGTCTAAGTGCTTTTGTTAGTTTTTATTTGGGTGTTATTGCTCTCTTCTGTTCGGCTAGAGCTAGAAATTACATTCTCCAAACTAAGGTTTGA 2322 39.06 MGFYSFTPAVSRIYTCCHCDVLSSLLFFHSPVRKIFVLNHSPVMELKRVSNFCPIRAPKLHVMQLFFLLMLCVNPSHSLNLDPEDKTSLLLLKSWFQDPNQNLSTWVGSNCTNWTGIACQNQTGRVVSINLINRNLSGKIHPSLCKLMFLENLVLSQNNFTCPIPRCFGSLLSLKTIDLSHNRFQGVIPDTLMRLRNIKEFVLTGNKALGGPIPYWIGNFSSKLEKLDLGFNSFSGELPDSLLYSKSLKYLDLQFNYLWGNLCDFYQSLVSLNLGSNQFSGTLPCFSASVQSLTALNLANNSIVGGIPTCIASLRALVHLNLSFNHLAYKISPRLIFSDRLLVLDLSNNDLAGPLPSKIAQTTEKSGLVLLDLSHNHFSGEIPSKITELKSLQALVLSHNLLMGEIPPRIGNLTYLQVIDLSFNSLSGSIPLNVVGCFQLLALILNDNNLSGEIQPELDALDSLKILDISNNMIFGEVPLTLAGCKSLEIVDFSSNNLSGTLNDAITKWSNLRYLSLAWNKFSGNLPGWLFSFEAIQLLDLSGNKFSGFIPEGNFNISLNFYNGDIGRIYKDPSTENQVLDFKVSTFVADSSELSFSYDLSSAVGIDLSSNVLHGTIPDSLFALKGIQILNLSHNALEGEVPGLENMKRLRALDLSYNYLSGQIPGNISRLKDLTLLDLSYNCLSGSVSNDGYGRFPGAFLGNPDLCVESSDGNSCGSKNTPALPGKKFQEEMIEGPISVWVFCLSAFVSFYLGVIALFCSARARNYILQTKV 773
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3976161 3979051 - Conep05aG0095400.1 Cone5ag0928 437946

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0928 773 Pfam Leucine Rich Repeat 650 671 IPR001611 GO:0005515(InterPro)
Cone5ag0928 773 Pfam Leucine Rich Repeat 463 485 IPR001611 GO:0005515(InterPro)
Cone5ag0928 773 Pfam Leucine Rich Repeat 368 388 IPR001611 GO:0005515(InterPro)
Cone5ag0928 773 Pfam Leucine Rich Repeat 223 242 IPR001611 GO:0005515(InterPro)
Cone5ag0928 773 Pfam Leucine Rich Repeat 416 433 IPR001611 GO:0005515(InterPro)
Cone5ag0928 773 Pfam Leucine Rich Repeat 391 413 IPR001611 GO:0005515(InterPro)
Cone5ag0928 773 SUPERFAMILY L domain-like 598 689 - -
Cone5ag0928 773 FunFam LRR receptor-like serine/threonine-protein kinase EFR 82 363 - -
Cone5ag0928 773 Gene3D Ribonuclease Inhibitor 437 563 IPR032675 -
Cone5ag0928 773 PANTHER OS04G0122200 PROTEIN 600 748 IPR051809 -
Cone5ag0928 773 Gene3D Ribonuclease Inhibitor 335 436 IPR032675 -
Cone5ag0928 773 Gene3D Ribonuclease Inhibitor 82 238 IPR032675 -
Cone5ag0928 773 Gene3D Ribonuclease Inhibitor 239 334 IPR032675 -
Cone5ag0928 773 SUPERFAMILY L domain-like 83 357 - -
Cone5ag0928 773 SMART LRR_typ_2 461 485 IPR003591 -
Cone5ag0928 773 SMART LRR_typ_2 171 194 IPR003591 -
Cone5ag0928 773 SMART LRR_typ_2 314 339 IPR003591 -
Cone5ag0928 773 SMART LRR_typ_2 389 413 IPR003591 -
Cone5ag0928 773 SMART LRR_typ_2 647 671 IPR003591 -
Cone5ag0928 773 FunFam LRR receptor-like serine/threonine-protein kinase 364 435 - -
Cone5ag0928 773 Gene3D Ribonuclease Inhibitor 601 707 IPR032675 -
Cone5ag0928 773 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 436 720 - -
Cone5ag0928 773 Pfam Leucine rich repeat 487 546 IPR001611 GO:0005515(InterPro)
Cone5ag0928 773 Pfam Leucine rich repeat 150 207 IPR001611 GO:0005515(InterPro)
Cone5ag0928 773 Pfam Leucine rich repeat 268 327 IPR001611 GO:0005515(InterPro)
Cone5ag0928 773 Pfam Leucine rich repeat N-terminal domain 83 119 IPR013210 -
Cone5ag0928 773 SUPERFAMILY L domain-like 339 556 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0928 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1682 Cone-Chr1:57914692 Cone5ag0928 Cone-Chr5:3976161 1.58E-211 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g833 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone5ag0928 Cone1ag1682 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla03g01042 Cam03g1087 Cec03g1095 Cco03g1084 Clacu03g1065 Cmu03g1648 Cre03g1350 . . . Cme02g00927
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012382 1 0 1 1 0 1 0 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 28