Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0933 ATGGAGTTCGATGCCGGAATTTCGATTTCACAAGCGTCTGTGACAGAGGCTTCCTCTTCTGCTTTGGCGCCATCGTTGAACAAAGATGCACTTTGGCAAATGAACTTGATCTCCAGTGAAAGAATGGAATCTGGGCCTTATCCTGAGAGGCCAGAGGAGCCGGATTGCTCTTATTACATCAGAACAGGACTCTGTAGATTTGGGGCGACATGTCGATTTAATCACCCTCCTAACAGAAAGCTGGCCATTGCTGCATCAAGGATGAAGGGGGAGTACCCAGAAAGAGTTGGACAACTAGAATGTCAGTACTATCTGAAGACAGGAACTTGCAAGTTTGGAGCAACATGCAAGTTTCATCATCCGAGAGACAAGGCCGGAATTGCTGGAAGAGTTTCACTTAACATATTGGGCTACCCCCTTCGATCAAATGAAACTGAATGTACCTATTATTCAAGAACCGGACAGTGCAAGTTTGGAAGCACGTGCAAATTTCACCACCCACAACCAACTAACATGATGGTCTCATTGGGTGGGTCCCCTATTTATCCGACTGCTCAATCTCCAACTCCTTCTGAGCAGTCGTATCCAGGGGGAATTACAAATTGGTCAAGTGCGTCTTTTATTACTAGTTCTAGATGGCAAGGCTCCTCTAGTTATGCTCCTTTAATCGTCCCTCAAGGAGTGGTTTCAGTTCCAAGTTGGAATGCTTATAGCGGTCAACTGGGTACGGTTTCTTCTTCAGAAACCCCACAACAAGCAGCAGGAAAAAGTAAAATCTACGGAACTTCTCGCCAGAGTGAGACAGCTAATGCAGGAGAGTCTCAGACAGCTTTTTCTTCATATCAGTCTGGTTCCATCCCTGTAGGGTTCTATGCTTTGCAAAGGGAGAATGCTTTTCCAGAAAGGCCTGGTCAGCCTGAATGTCAGTTTTACATGAAAACTGGAGATTGCAAGTTTGGTGCAGTTTGCCGGTTCCATCATCCAAGAGAGAGATTCGTCCCTCCTCCGGATTGTGTCTTGAGCCCAATGGGCCTCCCTTTACGTCAGGGAGAACCTCTGTGTATCTTCTATTCTCGTTACGGAATCTGCAAATTCGGTCCAAGTTGCAAGTTTGACCATCCAATGGGAATCTTCACATACAATCTCTCGCAATCAGCTTCATCCGAAACTCCGGTTTGGCGTTTGTTAGGGTCATCTTCAGGAGCTTCTGCACTGAACTTGTCTTCAGAAGGACTGGTTGAACCTGAGACCAGACAGATGTCTTCTGGTGATGATAACATTAACCCAGAGAGGATTGACATTTGA 1305 46.05 MEFDAGISISQASVTEASSSALAPSLNKDALWQMNLISSERMESGPYPERPEEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIAASRMKGEYPERVGQLECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVSLNILGYPLRSNETECTYYSRTGQCKFGSTCKFHHPQPTNMMVSLGGSPIYPTAQSPTPSEQSYPGGITNWSSASFITSSRWQGSSSYAPLIVPQGVVSVPSWNAYSGQLGTVSSSETPQQAAGKSKIYGTSRQSETANAGESQTAFSSYQSGSIPVGFYALQRENAFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERFVPPPDCVLSPMGLPLRQGEPLCIFYSRYGICKFGPSCKFDHPMGIFTYNLSQSASSETPVWRLLGSSSGASALNLSSEGLVEPETRQMSSGDDNINPERIDI 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3992290 3996509 - Conep05aG0095900.1 Cone5ag0933 437951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0933 434 MobiDBLite consensus disorder prediction 411 426 - -
Cone5ag0933 434 ProSiteProfiles Zinc finger C3H1-type profile. 50 78 IPR000571 GO:0046872(InterPro)
Cone5ag0933 434 SUPERFAMILY CCCH zinc finger 142 169 IPR036855 GO:0046872(InterPro)
Cone5ag0933 434 Gene3D - 127 175 - -
Cone5ag0933 434 SUPERFAMILY CCCH zinc finger 99 124 IPR036855 GO:0046872(InterPro)
Cone5ag0933 434 ProSiteProfiles Zinc finger C3H1-type profile. 95 123 IPR000571 GO:0046872(InterPro)
Cone5ag0933 434 SMART c3hfinal6 141 168 IPR000571 GO:0046872(InterPro)
Cone5ag0933 434 SMART c3hfinal6 302 329 IPR000571 GO:0046872(InterPro)
Cone5ag0933 434 SMART c3hfinal6 348 375 IPR000571 GO:0046872(InterPro)
Cone5ag0933 434 SMART c3hfinal6 95 122 IPR000571 GO:0046872(InterPro)
Cone5ag0933 434 SMART c3hfinal6 50 77 IPR000571 GO:0046872(InterPro)
Cone5ag0933 434 MobiDBLite consensus disorder prediction 411 434 - -
Cone5ag0933 434 SUPERFAMILY CCCH zinc finger 54 78 IPR036855 GO:0046872(InterPro)
Cone5ag0933 434 MobiDBLite consensus disorder prediction 242 276 - -
Cone5ag0933 434 ProSiteProfiles Zinc finger C3H1-type profile. 302 330 IPR000571 GO:0046872(InterPro)
Cone5ag0933 434 FunFam Zinc finger nuclease 2 49 126 - -
Cone5ag0933 434 Gene3D - 301 386 - -
Cone5ag0933 434 Gene3D - 47 126 - -
Cone5ag0933 434 ProSiteProfiles Zinc finger C3H1-type profile. 348 376 IPR000571 GO:0046872(InterPro)
Cone5ag0933 434 ProSiteProfiles Zinc finger C3H1-type profile. 141 169 IPR000571 GO:0046872(InterPro)
Cone5ag0933 434 PANTHER PROTEIN PHOSPHATASE RELATED 29 376 IPR050974 GO:0003729(PANTHER)
Cone5ag0933 434 SUPERFAMILY CCCH zinc finger 306 331 IPR036855 GO:0046872(InterPro)
Cone5ag0933 434 SUPERFAMILY CCCH zinc finger 351 375 IPR036855 GO:0046872(InterPro)
Cone5ag0933 434 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 144 168 IPR000571 GO:0046872(InterPro)
Cone5ag0933 434 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 52 77 IPR000571 GO:0046872(InterPro)
Cone5ag0933 434 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 100 122 IPR000571 GO:0046872(InterPro)
Cone5ag0933 434 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 350 375 IPR000571 GO:0046872(InterPro)
Cone5ag0933 434 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 303 329 IPR000571 GO:0046872(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1398 Cone-Chr10:10881579 Cone5ag0933 Cone-Chr5:3992290 2.62E-31 dispersed
Cone16ag0051 Cone-Chr16:266827 Cone5ag0933 Cone-Chr5:3992290 1.33E-26 dispersed
Cone2ag0950 Cone-Chr2:35149649 Cone5ag0933 Cone-Chr5:3992290 7.79E-24 dispersed
Cone3ag1462 Cone-Chr3:33273405 Cone5ag0933 Cone-Chr5:3992290 2.92E-26 dispersed
Cone5ag0933 Cone-Chr5:3992290 Cone8ag1553 Cone-Chr8:11644733 9.43E-27 dispersed
Cone1ag1687 Cone-Chr1:57933628 Cone5ag0933 Cone-Chr5:3992290 1.34E-196 wgd
Cone10ag0605 Cone-Chr10:2840936 Cone5ag0933 Cone-Chr5:3992290 1.00E-127 wgd
Cone3ag0631 Cone-Chr3:3113517 Cone5ag0933 Cone-Chr5:3992290 8.74E-134 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46160 PF00520 Ion_trans 5.10E-14 CL0030 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0933 - - - 0.0