Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0934 ATGGGTTTGCGCTCAAACCCTAGGGGAACATCGCTCTTCTCCCTCATTTTCCTCCTCCTTCTCATCTCTGCTCTCTCTCTCATCTCTGCTCAGGAATCGGGGTTGGAAACAGAGGAGTCGAGTGGATCCAAGGATCTAGGTCGCCGTAGTAAAGTTAATTTGAGCCACCTTGAGAGGCTCGCCTCGAAAGACAAAGATGATATTGATTCTGTCGAACTTGAGCTCGATTTGGACTCGGTTGGTGTTGGGGTTTTTGATGCATTTTTTGCAAGCTTGTCTATGATACTTGTCAGCGAGATTGGAGATGAGACGTTCATAATAGCGGCTCTTATGGCAATGCGTCATCCAAAGTCCATTGTTTTATCTGGTGCACTTTCTGCTTTGGTTGTAATGACGGTGCTTTCCACTGGACTAGGTAGAATTGTGCCAAATCTTATATCAAGGAAGCATACAAATAATGCAGCAACAGTCCTTTATGCATTTTTTGGGTTGCGTTTACTTTATATTGCTTGGAGATCAAGATCAGATTCAAAATCTTCGCAGAAAAAGGAAATTGAAGAAGTAGAAGAGAAACTTGAATCCGGGCAAGGGAAGACAGCAGTCCGACGTTTCTTCGCAAGATTTTGTACACCAATATTTTTGGAGTCATTCATTTTAACATTTCTAGCAGAGTGGGGTGATCGTAGCCAAATAGCAACCATTGCTTTAGCAACACACAAAAATGCTGTTGGAGTAGCATTAGGAGCCACATTGGGGCATACCATCTGCACATCGGTAGCTGTAATTGGTGGAAGTATGCTCGCTTCTAAGATATCTCAAGGCACTGTTGCCACTATTGGAGGATTGCTCTTTCTTGGCTTCTCCTTGTCTTCCTATTTCTATCCTCCTCTATAG 894 43.4 MGLRSNPRGTSLFSLIFLLLLISALSLISAQESGLETEESSGSKDLGRRSKVNLSHLERLASKDKDDIDSVELELDLDSVGVGVFDAFFASLSMILVSEIGDETFIIAALMAMRHPKSIVLSGALSALVVMTVLSTGLGRIVPNLISRKHTNNAATVLYAFFGLRLLYIAWRSRSDSKSSQKKEIEEVEEKLESGQGKTAVRRFFARFCTPIFLESFILTFLAEWGDRSQIATIALATHKNAVGVALGATLGHTICTSVAVIGGSMLASKISQGTVATIGGLLFLGFSLSSYFYPPL 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3997724 4004236 + Conep05aG0096000.1 Cone5ag0934 437952

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0934 297 Coils Coil 178 198 - -
Cone5ag0934 297 PANTHER TRANSMEMBRANE PROTEIN HTP-1 RELATED 48 296 IPR001727 GO:0005384(PANTHER)|GO:0005794(PANTHER)|GO:0015085(PANTHER)|GO:0032468(PANTHER)|GO:0032472(PANTHER)|GO:0046873(PANTHER)|GO:0046873(InterPro)|GO:0070588(PANTHER)|GO:0071421(PANTHER)
Cone5ag0934 297 Pfam Uncharacterized protein family UPF0016 90 163 IPR001727 GO:0046873(InterPro)
Cone5ag0934 297 Pfam Uncharacterized protein family UPF0016 215 287 IPR001727 GO:0046873(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0934 K23541 - - csv:101208917 397.897
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0380 Cone-Chr4:1727802 Cone5ag0934 Cone-Chr5:3997724 6.62E-36 dispersed
Cone5ag0934 Cone-Chr5:3997724 Cone6ag0461 Cone-Chr6:2270534 1.65E-51 dispersed
Cone1ag1688 Cone-Chr1:57936990 Cone5ag0934 Cone-Chr5:3997724 3.45E-187 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g843 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone5ag0934 Cone1ag1688 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008990 2 1 2 1 1 1 1 1 1 1 1 1 0 0 1 2 1 2 2 1 1 1 1 1 1 1 0 2 2 1 34