Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0937 ATGGGGGTGGTTGTAGAGTTGGACGAGAACGATACCCCTTTAATTCCGCCGCCTAATTTTTCCATGGTCGACGACGGCATTTTCAGATCCGGCTTCCCTGTTCCCGCCAATTTTCCATTCCTCCAGACGCTAAATCTCCGTTCTATCATATACTTGTGTCCCGAGCCGTATCCAGTAGAAAATTTGGAGTTTCTTCGTGCTCAAAATATTCAGCTTTTTCAATTCGGGATCGAAGGGAAAACGGAGCCCTTTGTATCTATTCCCAAGGATACTATCATGGAAGCTCTCAAAATCTTAATCGATTTCAGAAATCATCCCATCTTGATCCATTGCAAGCGCGGAAAGCATCGGACCGGGTGTCTTGTGGGTTGCCTGAGAAAGTTCCAGAACTGGTGTCTATCTTCTGTGATCGAAGAGTACCAGTGTTTTGCCGGAGTGAAATCACGGACAACAGATATGAGGTTCATAGAGAGTTTTGACATAATGCACGTAAGGCAATGTCTATACAGCATCTTATACCAGTATCAAGGATATGGTTCCAACAAGAGGAGGCTCATGTACAGAGAAGAAAATGTGCAGAAGCCTCGAGTTACTACCGTTTAG 603 44.78 MGVVVELDENDTPLIPPPNFSMVDDGIFRSGFPVPANFPFLQTLNLRSIIYLCPEPYPVENLEFLRAQNIQLFQFGIEGKTEPFVSIPKDTIMEALKILIDFRNHPILIHCKRGKHRTGCLVGCLRKFQNWCLSSVIEEYQCFAGVKSRTTDMRFIESFDIMHVRQCLYSILYQYQGYGSNKRRLMYREENVQKPRVTTV 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4009079 4010970 + Conep05aG0096300.1 Cone5ag0937 437955

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0937 200 ProSiteProfiles Dual specificity protein phosphatase domain profile. 19 168 IPR020422 GO:0006470(InterPro)
Cone5ag0937 200 ProSitePatterns Tyrosine specific protein phosphatases active site. 109 119 IPR016130 GO:0016311(InterPro)
Cone5ag0937 200 PANTHER TYROSINE-PROTEIN PHOSPHATASE 13 192 - GO:0005737(PANTHER)|GO:0016791(PANTHER)
Cone5ag0937 200 Gene3D Protein tyrosine phosphatase superfamily 13 163 IPR029021 -
Cone5ag0937 200 Pfam Tyrosine phosphatase family 14 163 IPR004861 -
Cone5ag0937 200 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 13 160 IPR029021 -
Cone5ag0937 200 FunFam probable tyrosine-protein phosphatase At1g05000 13 163 - -
Cone5ag0937 200 CDD PFA-DSP_Siw14 14 160 - -
Cone5ag0937 200 PRINTS Plant and fungal dual specificity phosphatase signature 87 101 IPR020428 GO:0016791(InterPro)
Cone5ag0937 200 PRINTS Plant and fungal dual specificity phosphatase signature 51 64 IPR020428 GO:0016791(InterPro)
Cone5ag0937 200 PRINTS Plant and fungal dual specificity phosphatase signature 14 31 IPR020428 GO:0016791(InterPro)
Cone5ag0937 200 PRINTS Plant and fungal dual specificity phosphatase signature 70 84 IPR020428 GO:0016791(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0937 K18045 - - mdm:103434267 332.413
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1505 Cone-Chr12:10695053 Cone5ag0937 Cone-Chr5:4009079 5.46E-78 dispersed
Cone5ag0937 Cone-Chr5:4009079 Cone5ag1838 Cone-Chr5:12920068 4.10E-78 dispersed
Cone1ag1691 Cone-Chr1:57943849 Cone5ag0937 Cone-Chr5:4009079 5.96E-101 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone8ag0143 . 93 660 Protein tyrosine phosphatase (PTP) family AT3G50110 60.7 4.9e-185 645.2
Cone3ag0992 . 43 618 Protein tyrosine phosphatase (PTP) family AT3G50110 57.8 6.9e-179 624.8
Cone10ag1013 . 35 522 Protein tyrosine phosphatase (PTP) family AT3G50110 63.5 9.4e-176 614.4
Cone4ag0515 . 1 371 Protein tyrosine phosphatase (PTP) family AT5G39400 58.7 3.1e-135 479.2
Cone7ag0488 . 1 291 Protein tyrosine phosphatase (PTP) family AT5G39400 52.8 5.3e-95 345.5
Cone11ag1023 . 15 858 Protein tyrosine phosphatase (PTP) family AT3G10550 69.5 0.0e+00 1171.0
Cone18ag0555 . 9 555 Protein tyrosine phosphatase (PTP) family AT3G10550 68.4 1.7e-217 753.4
Cone18ag0556 . 1 138 Protein tyrosine phosphatase (PTP) family AT3G10550 58.7 3.8e-39 161.0
Cone11ag1023 . 13 858 Protein tyrosine phosphatase (PTP) family AT5G04540 66.4 0.0e+00 1112.8
Cone18ag0555 . 9 555 Protein tyrosine phosphatase (PTP) family AT5G04540 68.6 6.9e-219 758.1
Cone2ag0575 . 1 1220 Protein tyrosine phosphatase (PTP) family AT5G58160 51.8 9.9e-302 1033.9
Cone17ag0984 . 1 1309 Protein tyrosine phosphatase (PTP) family AT5G58160 50.9 3.0e-290 995.7
Cone20ag0324 . 1 1253 Protein tyrosine phosphatase (PTP) family AT5G58160 53.0 1.4e-284 976.9
Cone15ag0895 . 1 399 Protein tyrosine phosphatase (PTP) family AT5G58160 55.3 1.8e-125 448.4
Cone20ag0690 . 24 264 Protein tyrosine phosphatase (PTP) family AT1G71860 63.9 2.6e-87 319.7
Cone13ag0255 . 22 932 Protein tyrosine phosphatase (PTP) family AT5G23720 63.5 0.0e+00 1077.0
Cone14ag0823 . 33 172 Protein tyrosine phosphatase (PTP) family AT3G06110 59.3 4.5e-45 178.3
Cone12ag1514 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 79.3 2.5e-73 272.3
Cone8ag1559 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 77.5 7.9e-72 267.3
Cone5ag0384 . 90 373 Protein tyrosine phosphatase (PTP) family AT3G52180 69.7 1.3e-116 416.8
Cone1ag1393 . 90 371 Protein tyrosine phosphatase (PTP) family AT3G52180 67.0 1.2e-109 393.7
Cone5ag0149 . 21 288 Protein tyrosine phosphatase (PTP) family AT3G10940 70.6 5.6e-112 401.4
Cone1ag1626 . 1 172 Protein tyrosine phosphatase (PTP) family AT3G10940 57.8 4.1e-54 209.1
Cone18ag1361 . 140 587 Protein tyrosine phosphatase (PTP) family AT3G01510 70.8 2.0e-196 682.6
Cone11ag0116 . 136 534 Protein tyrosine phosphatase (PTP) family AT3G01510 61.7 6.3e-158 554.7
Cone12ag1505 . 3 209 Protein tyrosine phosphatase (PTP) family AT2G32960 55.0 7.4e-71 264.6
Cone5ag1838 . 22 186 Protein tyrosine phosphatase (PTP) family AT2G32960 59.5 5.0e-67 251.9
Cone10ag1396 . 45 206 Protein tyrosine phosphatase (PTP) family AT2G32960 62.2 4.2e-66 248.8
Cone8ag1552 . 3 194 Protein tyrosine phosphatase (PTP) family AT2G32960 55.5 1.0e-64 244.2
Cone5ag0937 . 4 161 Protein tyrosine phosphatase (PTP) family AT2G32960 52.1 8.2e-54 208.0
Cone12ag0399 . 1 334 Protein tyrosine phosphatase (PTP) family AT2G35680 57.0 1.7e-99 360.1
Cone8ag0418 . 1 335 Protein tyrosine phosphatase (PTP) family AT2G35680 56.3 3.2e-98 355.9
Cone4ag0974 . 12 267 Protein tyrosine phosphatase (PTP) family AT2G35680 54.6 1.8e-77 287.0
Cone7ag1160 . 25 267 Protein tyrosine phosphatase (PTP) family AT2G35680 53.5 4.1e-77 285.8
Cone4ag0974 . 30 219 Protein tyrosine phosphatase (PTP) family AT5G56610 51.5 1.6e-46 183.3
Cone8ag0418 . 38 210 Protein tyrosine phosphatase (PTP) family AT5G56610 51.4 1.4e-42 170.2
Cone12ag0399 . 38 210 Protein tyrosine phosphatase (PTP) family AT5G56610 50.9 4.0e-42 168.7
Cone5ag1838 . 15 187 Protein tyrosine phosphatase (PTP) family AT4G03960 71.1 3.8e-75 278.5
Cone12ag1505 . 40 209 Protein tyrosine phosphatase (PTP) family AT4G03960 74.7 5.0e-75 278.1
Cone10ag1396 . 23 206 Protein tyrosine phosphatase (PTP) family AT4G03960 69.5 3.6e-73 271.9
Cone8ag1552 . 16 194 Protein tyrosine phosphatase (PTP) family AT4G03960 70.9 1.3e-70 263.5
Cone5ag0937 . 15 165 Protein tyrosine phosphatase (PTP) family AT4G03960 63.6 4.0e-56 215.3
Cone1ag1691 . 16 130 Protein tyrosine phosphatase (PTP) family AT4G03960 60.0 3.4e-39 159.1
Cone5ag0937 . 1 196 Protein tyrosine phosphatase (PTP) family AT3G02800 69.0 2.4e-80 295.8
Cone1ag1691 . 16 158 Protein tyrosine phosphatase (PTP) family AT3G02800 72.7 4.2e-61 231.9
Cone5ag1838 . 24 182 Protein tyrosine phosphatase (PTP) family AT3G02800 62.9 6.7e-59 224.6
Cone12ag1505 . 45 204 Protein tyrosine phosphatase (PTP) family AT3G02800 61.9 5.7e-58 221.5
Cone10ag1396 . 36 203 Protein tyrosine phosphatase (PTP) family AT3G02800 60.1 1.3e-57 220.3
Cone8ag1552 . 45 196 Protein tyrosine phosphatase (PTP) family AT3G02800 63.8 1.4e-56 216.9
Cone1ag1316 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 70.2 5.2e-67 253.4
Cone5ag0297 . 31 219 Protein tyrosine phosphatase (PTP) family AT3G55270 69.1 5.2e-67 253.4
Cone4ag0515 . 1 371 Protein tyrosine phosphatase (PTP) family AT5G39400 58.7 3.1e-135 479.2
Cone7ag0488 . 1 291 Protein tyrosine phosphatase (PTP) family AT5G39400 52.8 5.3e-95 345.5
Cone3ag0992 . 1 618 Protein tyrosine phosphatase (PTP) family AT3G19420 66.2 8.9e-232 800.4
Cone10ag1013 . 1 515 Protein tyrosine phosphatase (PTP) family AT3G19420 72.4 8.1e-217 750.7
Cone8ag0143 . 83 664 Protein tyrosine phosphatase (PTP) family AT3G19420 60.7 9.0e-200 694.1
Cone8ag0143 . 93 660 Protein tyrosine phosphatase (PTP) family AT3G50110 60.7 4.9e-185 645.2
Cone3ag0992 . 43 618 Protein tyrosine phosphatase (PTP) family AT3G50110 57.8 6.9e-179 624.8
Cone10ag1013 . 35 522 Protein tyrosine phosphatase (PTP) family AT3G50110 63.5 9.4e-176 614.4
Cone2ag0575 . 1 1220 Protein tyrosine phosphatase (PTP) family AT5G58160 51.8 9.9e-302 1033.9
Cone17ag0984 . 1 1309 Protein tyrosine phosphatase (PTP) family AT5G58160 50.9 3.0e-290 995.7
Cone20ag0324 . 1 1253 Protein tyrosine phosphatase (PTP) family AT5G58160 53.0 1.4e-284 976.9
Cone15ag0895 . 1 399 Protein tyrosine phosphatase (PTP) family AT5G58160 55.3 1.8e-125 448.4
Cone11ag1023 . 15 858 Protein tyrosine phosphatase (PTP) family AT3G10550 69.5 0.0e+00 1171.0
Cone18ag0555 . 9 555 Protein tyrosine phosphatase (PTP) family AT3G10550 68.4 1.7e-217 753.4
Cone18ag0556 . 1 138 Protein tyrosine phosphatase (PTP) family AT3G10550 58.7 3.8e-39 161.0
Cone11ag1023 . 13 858 Protein tyrosine phosphatase (PTP) family AT5G04540 66.4 0.0e+00 1112.8
Cone18ag0555 . 9 555 Protein tyrosine phosphatase (PTP) family AT5G04540 68.6 6.9e-219 758.1
Cone11ag1360 . 68 247 Protein tyrosine phosphatase (PTP) family AT3G44620 65.5 1.5e-71 266.9
Cone18ag0218 . 43 248 Protein tyrosine phosphatase (PTP) family AT3G44620 59.4 1.5e-71 266.9
Cone13ag1383 . 1 677 Protein tyrosine phosphatase (PTP) family AT3G09100 70.8 9.6e-288 986.5
Cone19ag1373 . 1 673 Protein tyrosine phosphatase (PTP) family AT3G09100 70.2 3.4e-285 978.0
Cone19ag1373 . 5 673 Protein tyrosine phosphatase (PTP) family AT5G01290 65.6 2.0e-261 899.0
Cone13ag1383 . 5 677 Protein tyrosine phosphatase (PTP) family AT5G01290 64.6 1.9e-259 892.5
Cone13ag1383 . 79 688 Protein tyrosine phosphatase (PTP) family AT5G28210 56.8 1.2e-188 657.1
Cone19ag1373 . 75 684 Protein tyrosine phosphatase (PTP) family AT5G28210 56.5 4.4e-186 648.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008556 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 35