Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0937 ATGGGGGTGGTTGTAGAGTTGGACGAGAACGATACCCCTTTAATTCCGCCGCCTAATTTTTCCATGGTCGACGACGGCATTTTCAGATCCGGCTTCCCTGTTCCCGCCAATTTTCCATTCCTCCAGACGCTAAATCTCCGTTCTATCATATACTTGTGTCCCGAGCCGTATCCAGTAGAAAATTTGGAGTTTCTTCGTGCTCAAAATATTCAGCTTTTTCAATTCGGGATCGAAGGGAAAACGGAGCCCTTTGTATCTATTCCCAAGGATACTATCATGGAAGCTCTCAAAATCTTAATCGATTTCAGAAATCATCCCATCTTGATCCATTGCAAGCGCGGAAAGCATCGGACCGGGTGTCTTGTGGGTTGCCTGAGAAAGTTCCAGAACTGGTGTCTATCTTCTGTGATCGAAGAGTACCAGTGTTTTGCCGGAGTGAAATCACGGACAACAGATATGAGGTTCATAGAGAGTTTTGACATAATGCACGTAAGGCAATGTCTATACAGCATCTTATACCAGTATCAAGGATATGGTTCCAACAAGAGGAGGCTCATGTACAGAGAAGAAAATGTGCAGAAGCCTCGAGTTACTACCGTTTAG 603 44.78 MGVVVELDENDTPLIPPPNFSMVDDGIFRSGFPVPANFPFLQTLNLRSIIYLCPEPYPVENLEFLRAQNIQLFQFGIEGKTEPFVSIPKDTIMEALKILIDFRNHPILIHCKRGKHRTGCLVGCLRKFQNWCLSSVIEEYQCFAGVKSRTTDMRFIESFDIMHVRQCLYSILYQYQGYGSNKRRLMYREENVQKPRVTTV 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4009079 4010970 + Conep05aG0096300.1 Cone5ag0937 437955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0937 200 ProSiteProfiles Dual specificity protein phosphatase domain profile. 19 168 IPR020422 GO:0006470(InterPro)
Cone5ag0937 200 ProSitePatterns Tyrosine specific protein phosphatases active site. 109 119 IPR016130 GO:0016311(InterPro)
Cone5ag0937 200 PANTHER TYROSINE-PROTEIN PHOSPHATASE 13 192 - GO:0005737(PANTHER)|GO:0016791(PANTHER)
Cone5ag0937 200 Gene3D Protein tyrosine phosphatase superfamily 13 163 IPR029021 -
Cone5ag0937 200 Pfam Tyrosine phosphatase family 14 163 IPR004861 -
Cone5ag0937 200 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 13 160 IPR029021 -
Cone5ag0937 200 FunFam probable tyrosine-protein phosphatase At1g05000 13 163 - -
Cone5ag0937 200 CDD PFA-DSP_Siw14 14 160 - -
Cone5ag0937 200 PRINTS Plant and fungal dual specificity phosphatase signature 87 101 IPR020428 GO:0016791(InterPro)
Cone5ag0937 200 PRINTS Plant and fungal dual specificity phosphatase signature 51 64 IPR020428 GO:0016791(InterPro)
Cone5ag0937 200 PRINTS Plant and fungal dual specificity phosphatase signature 14 31 IPR020428 GO:0016791(InterPro)
Cone5ag0937 200 PRINTS Plant and fungal dual specificity phosphatase signature 70 84 IPR020428 GO:0016791(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1505 Cone-Chr12:10695053 Cone5ag0937 Cone-Chr5:4009079 5.46E-78 dispersed
Cone5ag0937 Cone-Chr5:4009079 Cone5ag1838 Cone-Chr5:12920068 4.10E-78 dispersed
Cone1ag1691 Cone-Chr1:57943849 Cone5ag0937 Cone-Chr5:4009079 5.96E-101 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0937 K18045 - mdm:103434267 332.413