Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0939 ATGGCAGAATGTGCTGATTATAATAGTAGTTGCAATAAAAACCTAATTCTAAATCCCAAGAACGAGGAGGAAGAGGATGATCATGATCATGATCAAAATAACAATAATGTCATCATGCAAGGAGGTGGGGTTTTGGGCCCGCCTTCCACAGTGGTGGCGGGTAAGACTGGAGGGAGCTTTTCAGAGAGAAGAGCTGCCAAGTGTGGGAGCGAGTTCAATGTGCCTCGGATCAACACGGTTCGGTTCCGTTCCTTGAGCCCTTTGACTTCACCAGGGGCCCGCTCCCCTTGGCTCACTATCTCGCCTGGGATTAGCCCTGCTGCTTTGCTCGAATCCCCCATCATGCTGCCCAAATCTCAGGCTCTGCCATCTCCTACCACTGGAGCGTTACCTACACCGTCTATAAACGACGAAAATTCATTGCTTAATCCCGTCACTCCTGAAAATGGGGACAGAGGAAGCAATAAGGCTTACTGCTTAAGGTTCAACTCGGATGCAGATCATAAGTCCCAGTTAGCTTCCTTGAATGCAGATAATGTCCGCATTTTCAACAACATGGTTACAAATAATTCCGATAAGGATAGAAAAGGAGTATACGTGCCTGAAGAATCTACCCGGAAAGAAGACATTAAGCGACATCATCCTCGTACCGAAGATGACCGGAAAGAATTGACATTTCCTTTTTTTGGAATGTCTAGAACATCAGAAGACGGATACAATTGGCGAAAATACGGACAAAAACAGGTCAAAGGAAGCGTATATCCGAGAAGTTACTATAAATGCACATATCACAACTGTCAAGTAAAGAAAAAGGTCGAACGATCTCTTGAGGGTCAAATAACAGAAATCATCTATAAGGGCGCTCATAACCACAACAAGCCTCAGCCTAATCGACGTGCCCCATTTGCATTATCGGACGAGGCTTTAGAGATGGAAGGCGGTGGGGCCGTTTGGAGATATATTCAAACGGGGTCGTCTAAGGAAGGGAAAGCTATATTGGATTGGAGAAATAATGACAGGTTGGAAAGGGCGTCTTCTATGTCAGTTTTGACTGATATTTTTTATCCTTTGTCAAACAACCAAGGGAAAGGAGTGTGTGCGTTTGACTCAGACCTTTTATCGACTCTTACTAGTCATGATGAATATGATGGGACGACAGAGGGGAGTGTTTCTGTTGGAGGTGACGATGCAGATTGGGAAGAATCTGAATCTACGAGAAGGAAGAAAGAGTGCTGCATAGTTGAACCCGAAATGATATCCAGGGCTGTCCAGGAACCAAGGGTTGTCATCGAGCTTCCGAGTGACGTTGACGTACTTGAAGACGGGTATAGGTGGCGCAAGTATGGCCAAAAAGTTGTCAAAGGAAATCCAAATCCAAGGAGCTACTACAAATGTACTACTGCAGGATGTCCGGTCCGAAAGCATGTAGAGAGGGCATCACACAACCTGAAGCACATAGTCGTAACATATGAAGGAAAACACAATCACAAAAACCCTGCAGCTGTAACCAGCCGACAAACAGGCTCGAACTCGGGCTCAGCCAACGCACCATTATCCATCACTTCTCAACCAGCCCACCTAACAACACTAGCAAGAAATGCCAACGTTGCTCCCCATTCCAAAACACAAATGCAAGACCTTGAAACTCATTTCGAGAGAAAACCCGAGTTTTTTAACAAATATTATCATCTAGGTGGAGAGACCACTCATTTCGGAGCTTCCTCCATATACCCAATGAAATTTCCACATCTAGCAAACACCTCGACTTATGCCTCCTCCATTGGAATGAATTTCAACCACAATGCAATGACTCATCTTCATCATAATCACCTGGGCTCTTTCGCATCCATAGTTCCGGATTTTCCAATTACATTGCCACTGAATCAGAACCTTTCTGCCGCTCGTTTTGGTCTTGATTGTGGAAGAGGAATACTAGGTCCAGTACAATCGTTCCCCGGAGGACAGTTGTTTAAACAAGAGATGAAGGAGGATAATATATATGATGCTTATGCGCCCATGATCGATCAGACTAATGTCACATCCTCTTCCGCATACCATTTAGTCATGGAAAACTTCCTTTAG 2082 44.81 MAECADYNSSCNKNLILNPKNEEEEDDHDHDQNNNNVIMQGGGVLGPPSTVVAGKTGGSFSERRAAKCGSEFNVPRINTVRFRSLSPLTSPGARSPWLTISPGISPAALLESPIMLPKSQALPSPTTGALPTPSINDENSLLNPVTPENGDRGSNKAYCLRFNSDADHKSQLASLNADNVRIFNNMVTNNSDKDRKGVYVPEESTRKEDIKRHHPRTEDDRKELTFPFFGMSRTSEDGYNWRKYGQKQVKGSVYPRSYYKCTYHNCQVKKKVERSLEGQITEIIYKGAHNHNKPQPNRRAPFALSDEALEMEGGGAVWRYIQTGSSKEGKAILDWRNNDRLERASSMSVLTDIFYPLSNNQGKGVCAFDSDLLSTLTSHDEYDGTTEGSVSVGGDDADWEESESTRRKKECCIVEPEMISRAVQEPRVVIELPSDVDVLEDGYRWRKYGQKVVKGNPNPRSYYKCTTAGCPVRKHVERASHNLKHIVVTYEGKHNHKNPAAVTSRQTGSNSGSANAPLSITSQPAHLTTLARNANVAPHSKTQMQDLETHFERKPEFFNKYYHLGGETTHFGASSIYPMKFPHLANTSTYASSIGMNFNHNAMTHLHHNHLGSFASIVPDFPITLPLNQNLSAARFGLDCGRGILGPVQSFPGGQLFKQEMKEDNIYDAYAPMIDQTNVTSSSAYHLVMENFL 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4013009 4016281 - Conep05aG0096500.1 Cone5ag0939 437957

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0939 693 Pfam WRKY DNA -binding domain 440 497 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone5ag0939 693 Pfam WRKY DNA -binding domain 236 292 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone5ag0939 693 ProSiteProfiles WRKY domain profile. 434 499 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone5ag0939 693 FunFam WRKY transcription factor 222 295 - -
Cone5ag0939 693 MobiDBLite consensus disorder prediction 121 150 - -
Cone5ag0939 693 FunFam WRKY transcription factor 427 500 - -
Cone5ag0939 693 MobiDBLite consensus disorder prediction 121 152 - -
Cone5ag0939 693 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 196 523 IPR044810 GO:0003700(InterPro)
Cone5ag0939 693 ProSiteProfiles WRKY domain profile. 236 294 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone5ag0939 693 SUPERFAMILY WRKY DNA-binding domain 233 294 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone5ag0939 693 SUPERFAMILY WRKY DNA-binding domain 434 499 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone5ag0939 693 MobiDBLite consensus disorder prediction 494 519 - -
Cone5ag0939 693 Gene3D WRKY domain 424 500 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone5ag0939 693 Gene3D WRKY domain 228 295 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone5ag0939 693 MobiDBLite consensus disorder prediction 499 519 - -
Cone5ag0939 693 SMART WRKY_cls 439 498 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone5ag0939 693 SMART WRKY_cls 235 293 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0939 K18835 - - mdm:103451420 567.77
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag0939 Cone-Chr5:4013009 Cone7ag0070 Cone-Chr7:297307 4.34E-79 dispersed
Cone10ag0603 Cone-Chr10:2835417 Cone5ag0939 Cone-Chr5:4013009 2.14E-152 wgd
Cone3ag0629 Cone-Chr3:3107909 Cone5ag0939 Cone-Chr5:4013009 6.91E-155 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g850 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone5ag0939 . Cone10ag0603 Cone3ag0629 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla03g01024 Cam03g1073 Cec03g1078 Cco03g1071 Clacu03g1044 Cmu03g1634 Cre03g1334 Lsi06g00700 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005091 1 5 1 1 1 1 2 1 1 1 1 1 2 0 1 2 1 3 1 1 1 0 1 1 1 1 1 2 3 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46161 PF00520 Ion_trans 1.60E-11 CL0030 Cone TF