Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0942 ATGAGCTCGAAGGAGAAACCCACTCTCGGTGGTACGCGGATCAAGACCCGCAAACGGAACATTGCAGCTCCGTTGGACCCTGCAGCCTTTGCAGATGCAGTGGTCCAGATTTATCTGGATAATGCTGGTGATCTGGAACTTGTTGCTAAGAGCGTTGAGTCTTCTGAGCTTAACTTCTCAAGATACGGAGACACCTTCTTTGAGGTTGTCTTCACAGGGGGGCGTACACAGCCTGGAACAACAAAGCCTGATGAGGGGGAGCGCCATTCTTACTCTATAATAGATTGTGAACCAGAGCGTGAGCTCATCTTACCCTCTGTCATCTATGTTCAGAAGATTCTGCGTAGAAAGCCTTTTCTCATAAAGAATCTTGAAAATGTTATGCGGAGATTCTTGCAGTCCTTGGAGCTCTTTGAGGAGAATGAAAGGAAGAAGCTTGCAATATTCACTGCCCTCGCCTTTTCCCAGAAGCTATCAGGTCTTCCTCCAGAGACTGTTTTCCAGCCACTGCTAAAGGACAACCTTGTGGGCAAGGGAGTAGTCCTTTGCTTTATTACTGACTTTTTCAAGGAGTATCTGATCGATAATAGCCTTGATGATTTGATTGCTATTCTTAAGCGAGGAAAAGTGGAGGACAATCTTATGGAATTCTTCCCTTCTGCAAAACGATCCCCTGAGGGTTTCTCTGAGCATTTCACCAAGGAAGGGCTGGTGGCTTTAGTTGAATACAATGAGAAGAAGATATTTGAGGTGAAACTTAAGGAAATGAAGTCTACTTTAACAACCCAGATCACAGAGGAAACAGACATATCTGAAGTCATAGAAACTGTGAAGCAACGAGTCAAAGATGCTAAGCTACCTGACGTTGAGGTTGTTCGGATTTTGTGGGATGTTATAATGGATGCTGTGCAGTGGTCTGGAAAGAACCAGCAACAAAATGCTAATTCTGCTCTTCGCCAGGTGAAAACTTGGGCGAAATTGCTGAGTGCCTTTTGCACAAGTGGGAAACTTGAGCTTGAACTGATGTACAAAGTTCAGATGCAATGCTATGAAGATGCAAAGCTGATGAAGCTCTTTCTGGAGATTGTTCGGTCTCTCTACGACCAGGATGTGCTGGCAGAGGACACTATTCTCCATTGGTTCCGCAAAGGAACAAATCTCAAGGGCAGACTTTTGTGA 1179 44.95 MSSKEKPTLGGTRIKTRKRNIAAPLDPAAFADAVVQIYLDNAGDLELVAKSVESSELNFSRYGDTFFEVVFTGGRTQPGTTKPDEGERHSYSIIDCEPERELILPSVIYVQKILRRKPFLIKNLENVMRRFLQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVGKGVVLCFITDFFKEYLIDNSLDDLIAILKRGKVEDNLMEFFPSAKRSPEGFSEHFTKEGLVALVEYNEKKIFEVKLKEMKSTLTTQITEETDISEVIETVKQRVKDAKLPDVEVVRILWDVIMDAVQWSGKNQQQNANSALRQVKTWAKLLSAFCTSGKLELELMYKVQMQCYEDAKLMKLFLEIVRSLYDQDVLAEDTILHWFRKGTNLKGRLL 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4029985 4033139 + Conep05aG0096800.1 Cone5ag0942 437960

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0942 392 Gene3D - 252 385 - -
Cone5ag0942 392 PANTHER BASIC LEUCINE ZIPPER AND W2 DOMAIN-CONTAINING PROTEIN 1 390 IPR051245 GO:0005737(PANTHER)|GO:0016020(PANTHER)
Cone5ag0942 392 SUPERFAMILY ARM repeat 250 380 IPR016024 -
Cone5ag0942 392 Coils Coil 121 141 - -
Cone5ag0942 392 ProSiteProfiles W2 domain profile. 246 392 IPR003307 GO:0005515(InterPro)
Cone5ag0942 392 SMART 542_3 325 389 IPR003307 GO:0005515(InterPro)
Cone5ag0942 392 Pfam eIF4-gamma/eIF5/eIF2-epsilon 338 386 IPR003307 GO:0005515(InterPro)
Cone5ag0942 392 FunFam ARM repeat superfamily protein 243 392 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0942 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1699 Cone-Chr1:57961584 Cone5ag0942 Cone-Chr5:4029985 6.99E-272 wgd
Cone10ag0599 Cone-Chr10:2820638 Cone5ag0942 Cone-Chr5:4029985 1.40E-255 wgd
Cone3ag0625 Cone-Chr3:3091583 Cone5ag0942 Cone-Chr5:4029985 3.86E-255 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g871 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone5ag0942 Cone1ag1699 Cone10ag0599 Cone3ag0625 . . . . . . . . . . . . . . . . . . Car05g00753 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004317 1 1 2 4 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 2 1 1 1 1 1 1 1 43