Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0944 ATGGGAAGGTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCACCCTTTCCTTCTTCCTCTTCTTTTGTAGTTGCTTAGTGATGATCACTGATGCAGCTCCTATAACCTCTCTCATCACACAACTTCCAGGCTTTAATGGAACCTTACCATCTAAACACTACTCTGGATATGTAAATATAGATGGAAATGAAACATCTGGAAAAAATCTGTTCTTCTACTTTGTTGAATCAGAGAGAAGCCCAAGAATTGATCCTGTCATTTTGTGGCTCAATGGTGGACCTGGTTGTTCTAGCTTCGATGGTTTTGTATATGAACATGGTCCATTCAATTTCGAAGAAGGAAAAGAGAAAGGAAGTCTTCCCAAATTACATCTCAATCCTTATAGCTGGTCCAAGGTTTCAAATATAATCTATTTAGACTCTCCAACTGGAGTTGGCCTATCTTACTCCAAAAACACGACCAATTACGTCACTGGTGATCTCCAAACTGCTTTAGACACTCATACTTTCCTTCTAAGGTGGTTTGAACAGTTTCCAGAATTTCTATCAAATCCATTTTACATCGCAGGAGAGTCTTATGGTGGAATCTATGTGCCCACTCTTGCTTCTCAAGTAGTCCAAGGACTAAAAGATGGAGCAAAACCAGAAATCAAGCTTAAGGGTTACATGGTTGGTAATGGAGTCGCGGACGAAGTATTTGATGGGAATGCCCTTGTCCCTTTTGCACATGGCATGGGCCTTATTTCGGACCGTATATTTTTGGATACTGAAGCATCATGTGGAGGAAACTACTACAAATCACAAAACACTAATTGTTCCGAACAGCTTCAACGAGTGGACGAGGCATTAGTGGGGCTAAATGTATACGACATTCTCGAGCCATGTTACCATAGACCAGAAGAATCTAACAACAACAGAAACAATACAAGGCAGCAGCTTCCACTTAGCTTTCAGGAACTAGGAAAGAGTGAAAGGCCACTTGCTGTAAGAAAGAGAATATTCGGACGGGCCTGGCCCTTTAGGGCTCCTGTTCGAGATGGGCCTATTACTTTATGGCCACAATTAGCTGCTGACGCCCAGTTCCACGTCCCTTGCGTTAACGATGAGGTTGCAAGCATATGGTTGAATGATGCAGAAGTTAGAACAGCCATTCATGCCAAGCCAAAAAGTGTAGCGGGTGAGTGGGAGATATGCACAGGAAGAATAAGTTACTCACACGATGCTGGAAGTATGATTCCTTACCATAAAAACCTCACAATTCAGGGGTTTAAAGCACTCATTTTCAGCGGGGACCATGATCTGTGTGTGCCATTTACTGGTAGCCAGGCATGGACTCAGTCACTTGGTTACCAAATTATTGAGGAATGGAGGTCATGGCTTTCTAGTGCCCAAGTTGCAGGGTATGTTCAAGGATATGCCCATAACCTTACTTTTCTGACAGTAAAGGGGTCAGGCCACACTGTTCCTGAATACAAGCCAAGAGAAGCATTGGATTTCTATAGCCGTTGGTTACAAGGAAAGCCAATATGA 1527 42.63 MGRFFFFFFFFFFTLSFFLFFCSCLVMITDAAPITSLITQLPGFNGTLPSKHYSGYVNIDGNETSGKNLFFYFVESERSPRIDPVILWLNGGPGCSSFDGFVYEHGPFNFEEGKEKGSLPKLHLNPYSWSKVSNIIYLDSPTGVGLSYSKNTTNYVTGDLQTALDTHTFLLRWFEQFPEFLSNPFYIAGESYGGIYVPTLASQVVQGLKDGAKPEIKLKGYMVGNGVADEVFDGNALVPFAHGMGLISDRIFLDTEASCGGNYYKSQNTNCSEQLQRVDEALVGLNVYDILEPCYHRPEESNNNRNNTRQQLPLSFQELGKSERPLAVRKRIFGRAWPFRAPVRDGPITLWPQLAADAQFHVPCVNDEVASIWLNDAEVRTAIHAKPKSVAGEWEICTGRISYSHDAGSMIPYHKNLTIQGFKALIFSGDHDLCVPFTGSQAWTQSLGYQIIEEWRSWLSSAQVAGYVQGYAHNLTFLTVKGSGHTVPEYKPREALDFYSRWLQGKPI 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4041034 4043669 - Conep05aG0097000.1 Cone5ag0944 437962

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0944 508 ProSitePatterns Serine carboxypeptidases, histidine active site. 475 492 IPR033124 GO:0004185(InterPro)
Cone5ag0944 508 Gene3D - 360 508 - -
Cone5ag0944 508 Pfam Serine carboxypeptidase 42 505 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cone5ag0944 508 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 37 502 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)|GO:0016747(PANTHER)|GO:0019748(PANTHER)
Cone5ag0944 508 FunFam Carboxypeptidase 31 319 - -
Cone5ag0944 508 SUPERFAMILY alpha/beta-Hydrolases 38 507 IPR029058 -
Cone5ag0944 508 Gene3D alpha/beta hydrolase 31 320 IPR029058 -
Cone5ag0944 508 PRINTS Carboxypeptidase C serine protease (S10) family signature 138 148 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cone5ag0944 508 PRINTS Carboxypeptidase C serine protease (S10) family signature 173 198 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cone5ag0944 508 PRINTS Carboxypeptidase C serine protease (S10) family signature 125 137 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cone5ag0944 508 PRINTS Carboxypeptidase C serine protease (S10) family signature 475 488 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cone5ag0944 508 FunFam Carboxypeptidase 410 505 - -
Cone5ag0944 508 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
Cone5ag0944 508 FunFam Carboxypeptidase 363 507 - -
Cone5ag0944 508 ProSitePatterns Serine carboxypeptidases, serine active site. 187 194 IPR018202 GO:0004185(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0944 K16296 - - csv:101209433 733.021
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0714 Cone-Chr17:4974459 Cone5ag0944 Cone-Chr5:4041034 2.17E-243 dispersed
Cone5ag0944 Cone-Chr5:4041034 Cone8ag1069 Cone-Chr8:9700799 1.54E-109 dispersed
Cone5ag0944 Cone-Chr5:4041034 Cone4ag1623 Cone-Chr4:12314381 1.61E-118 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g875 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone5ag0944 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002964 2 3 2 2 2 1 1 1 1 2 2 1 1 2 2 2 1 2 2 1 2 2 2 2 2 2 2 2 2 2 53