Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0959 ATGGAGCTAGTGAACGCGGATAAGCAATTATCCGTCGATGCTCTTTCCTTTGCCCGAAGTTATCAGTTGGAGGCATTAGTGAAGGCAATGAAGCAAAACACGATAGTGTTCTTGGAGACTGGCTCTGGAAAAACTCTGATTGCTATCATGCTCTTAAGGAGCTATGCTCATCTTCTCCGCAAGCCCTCCCCCTTCATTGCAGTCTTCTTAGTTCCTCAAGTTGTTTTGGTGCCTCAACAAGCTGAAGCTGTGAAAAGGCACACCGACTTGAAAGTGGGTATGTATTTTGGAGAAATGGGAGTCGACTTCTGGAATGCTGCAACTTGGAAGCAAGAAATAGAAAAACACGAGGTGCTTGTGATGACCCATCAAATTCTTCTGGATGGGTTGAGGCGTAGCTTTTTCAAATTAAGCATGATAAAGGTCTTAATACTGGATGAATGCCATCATGCCAGGGGTAAACATCCATATGCATGCATTATGACAGAGTTCTATCATCGGCCGTTAGTTCCTGGTAAATCTGATCTTCCAAGGATATTTGGGATGACTGCTTCCCCTATTAAGTCAAAAGGTGGGAATGCAGAATTGACCTATTGGAAAAGTATCCAAGAACTCGAAAATCTCATGAATTCAAAGGTGTACACCTGTGCTAGTGAATCTGTACTGGCCGAGTATATACCAATTTCAACTCCGAAGTTCAAATTTTACGGGCACAGGAAAATCCTACCTGCCTTGTATGTTCGGTTGGAAAATGAACTGAAGAGTTTGAAAGAAAAGCATGAACATTCGCTTCGGAATTTGGATCTCGATAAATCTGCTATAGAGTCTGCTGGGACAAAGATGTCAAAAGCTTTTGCTGCTTTGATATATTGTGTGGATGAACTTGGATTGTGGTTTGCTTGGAAGGCAGCAGAGTCCTTGTCATTGTCTGAAGATGACTGCTTTTCATGGGGAAAGATACATGCATCTTGTGAGGCAATTGTTAAACGTTTTTGCTCAGATGCTTATCGTTCATTTGCAAATTACATTCCATCTGGTCCAGAGTGGTCCATAGTTGATGATGTCCAAGCTAATGTGGCCCCTGGCCTTGTGACAGCTAAAGTTGTCTGCCTGATTGAATCCCTTCTAGAATACAGGGGTTTCAAAGATATAAGATGTATAATTTTCGTGGAAAGAGTTGTTGCTGCTGTTGTTCTCCAATTGCTTTTGAGTGAGTTGCTACTGAAACACAATTCCTGGAAAACCAAGTACATAGCTGGAAGTAGTGCAAGGTTGCAGTCCCAGACAAGGAAAGAACAAAATAAAATTGTTGAAGAATTTCGTAGTGGAGTGGTAAACATCATTGTTGCAACATCAATTCTGGAAGAGGGTTTAGATGTTCAAAATTGCAATCTCGTCATCAGATTTGACCCTTCATCTACAGTATGCAGCTTCATTCAATCCCGGGGGAGAGCAAGAATGAAAAATTCAGATTATATACTGATGGTGAAGAGTGGGGATACCGAGACTCGTTCTCGACTTGAGAAATATCTTGTCAGTGGGGATATTATGAGGGAGGAGTCATTGCGCCATGCGTCCCTTCCATGTGCTCCTCTTGAAAATGATTATTTTGAGGAGTCATATTGTGTTGAAAGTACTGGAGCAACTGTGACTCTTAGTTCCAGTGTTAATTTGATATACTTTTATTGTGCAAAGCTTCCTTCGGATGGTTATTCTAGACCAGCACCAACATGGGATAAGGAAACTTGCACTCTCCATCTCCCTAAGAGTTGTCCAATAGATTCTATTTGCGTAGAAGGAAATACTAAAATTATGAAGCAAAAGGCATGTCTCGAAGCATGTAAACGACTTCATCAGATTGCTGCTTTGACAGATAATCTTGTCCCGGAAATAGTTGTTGAAGAGGCTGTTTCGCAAGAATTTGGGAATAGAAGTTATGATGATGAACAACCCAGTTATGTTCCGCCCGAACTCATCAATTGTTGTCCTAAGAATTCCAGTAGAATGTATCACTGCTACCTGATTGAGTTAAAGCAGAATTTTCACTATGACATTCCTGCTCAAAACCTTGTGCTTCTCTTGAGAAATGAGCTGCAATCTGAAATTGGGAGCATGTCTTTTCACTTGGATGTTGACAGGGGAACTTTAATGGTGAAGTTTAAGTACGTAGGAGTGATGGATTTAAACCCACAAATGGTTCTTATCTCTAGGAAGTTTCAAGTTACTCTCTTTAGAATTCTTTGTGACCATAACTGGAATAAATTCAGAGAGGCCTTGGATAGAGTTTGTTTGGAAGATGATCCTGAAATTGATTATCTTTTGCTACCTTCAAATGGCAGAGAACAAAAAATCATTGATTGGGAGGTTGTTCTGTCTGCGTTGTTCTTATCTGGTCGAAGTAGAGAGGTTCACAAGAATTGTTCGGAGGGTCGTGCTCATAGTGTTCAGACAGTAAATGGTCCTGTTTGCATTTGCAGGCTTCAAAATTCAGTGGTCTTTACCCCTCATAATGGTCAGGTGTATTGCATCACTGGAACCTTGGATCTAGATGGAAACTCTTTTTTAAGACTCAGAAATGGTCAGGTTTTGACTTACAAGGACTATTACAAATTAAAGCATGGCGTTGAATTGCTTTATAGCAAAGAGTCATTACTTAAAGGGAGACAAATATTTACGGTGCATAATTACCTTCAGAGGTGCAGGCTAGCGAGGGAAAAAGGTGCAGAATCAAGTAATGCATTTGTTGAACTTCCTCCTGAACTCTGTTGTATCATAATGTCGCCAATATCCGTCAATACTCTATATTCATTTTCATTTGCTCCGGCTATTATGCATCGACTGGAGTCTTTGCTCATTGCTGTCAACTTAAAACAGCTACATTTGGATCATTGCATGCAAAATGATATTCCAGCCATCAAGGTCTTGGAAGCACTAACAACGAAAAAATGCCAAGAGAATTTTCATCTGGAATCCCTGGAGACACTTGGCGATTCTTTTCTCAAATACGCCACTAGTCAACAACTTTTTAAAACTTATCAAAGCCACCATGAGGGCCTTCTCAGTGCAAAGAAAGATAGAATAGTCTGTAATGCATCCCTCTGTCAGCTTGGATGTGACTCTAAGCTTCCGGGCTTTATTCGTAATGAGCCGTTTGATCCTAAAACTTGGATAATACCTGGTGATAAATCTAAAACCAACACTCTACGTGAGGAACCACTTTCTGATACTAGAAAAGTCTACATCAGAATAATGAGGAAGGTGAAAAATAAATCGGTTGCCGATGTTGTAGAGGCTCTAATTGGTGCATTTCTTAGTAGCACTGGTGGAGAAATTGCAGCCTTGAAGTTTATGAGTTGGATCGGTATAAAGGTTGATTTTGACTTTATACCATACGAGAGGCCCTTCAAAGTCAATGCAGAGAACCTCATTAATGTCAAACATTTTGAGTCCCTACTCAACTATAAATTCCATGACCCTTCTTTGCTACTAGAAGCTCTGACTCATGGTTCCTACATGCTTCCTCAGAGTCCAAGATGTTATCAGCGGTTAGAATTCCTTGGGGACTCGGTGTTGGATTATCTCATGACGGTTCATTTGTACAATAAATATCCCGGTATGTCACCTGGATTTTTAACCGACATGAGGTCGGCTTCGGTGAACAATGACTGCTATGCACGTTGTTCAGTCAAAGCCGAGTTACACAAACATATCCTTCATTTATCTAGTAAACTCCACAAGGATATTGTGCGCACGTTGCAAAGTTTCAAAACTTTATCTTCAGAAACAACTTTTGGATGGGAATCTGAGACTTCTTTTCCTAAGGTACTTGGAGATGTTATAGAGTCTCTAGCAGGAGCAATTCTTGTCGATTCAGGATATAACAAAGAGAGAGTGTTTGAGAGCATACGACCTCTTTTGGAGCCATTAATTACACCCGAGACAGTGATGCTCCATCCTGTTAGAGAATTGAACGAGTTATGCCAGAAAGAACATTACATTAATAGGAAACCTATTGTGTCCCGACACAACGGTGTGGCGTCCTTGACTATCGAAGTTGAAGTTGACGGGACTGTATATAAACATACCTCTTCAGCTTCTGGTAAGGAGATTGCCAAGAAGGTAGCATGCAAAGAAGTTCTTAAGTTATTGAAAAAGATTCATCTAAATGAAGCTTCTGGTAAGGGATAA 4188 40.57 MELVNADKQLSVDALSFARSYQLEALVKAMKQNTIVFLETGSGKTLIAIMLLRSYAHLLRKPSPFIAVFLVPQVVLVPQQAEAVKRHTDLKVGMYFGEMGVDFWNAATWKQEIEKHEVLVMTHQILLDGLRRSFFKLSMIKVLILDECHHARGKHPYACIMTEFYHRPLVPGKSDLPRIFGMTASPIKSKGGNAELTYWKSIQELENLMNSKVYTCASESVLAEYIPISTPKFKFYGHRKILPALYVRLENELKSLKEKHEHSLRNLDLDKSAIESAGTKMSKAFAALIYCVDELGLWFAWKAAESLSLSEDDCFSWGKIHASCEAIVKRFCSDAYRSFANYIPSGPEWSIVDDVQANVAPGLVTAKVVCLIESLLEYRGFKDIRCIIFVERVVAAVVLQLLLSELLLKHNSWKTKYIAGSSARLQSQTRKEQNKIVEEFRSGVVNIIVATSILEEGLDVQNCNLVIRFDPSSTVCSFIQSRGRARMKNSDYILMVKSGDTETRSRLEKYLVSGDIMREESLRHASLPCAPLENDYFEESYCVESTGATVTLSSSVNLIYFYCAKLPSDGYSRPAPTWDKETCTLHLPKSCPIDSICVEGNTKIMKQKACLEACKRLHQIAALTDNLVPEIVVEEAVSQEFGNRSYDDEQPSYVPPELINCCPKNSSRMYHCYLIELKQNFHYDIPAQNLVLLLRNELQSEIGSMSFHLDVDRGTLMVKFKYVGVMDLNPQMVLISRKFQVTLFRILCDHNWNKFREALDRVCLEDDPEIDYLLLPSNGREQKIIDWEVVLSALFLSGRSREVHKNCSEGRAHSVQTVNGPVCICRLQNSVVFTPHNGQVYCITGTLDLDGNSFLRLRNGQVLTYKDYYKLKHGVELLYSKESLLKGRQIFTVHNYLQRCRLAREKGAESSNAFVELPPELCCIIMSPISVNTLYSFSFAPAIMHRLESLLIAVNLKQLHLDHCMQNDIPAIKVLEALTTKKCQENFHLESLETLGDSFLKYATSQQLFKTYQSHHEGLLSAKKDRIVCNASLCQLGCDSKLPGFIRNEPFDPKTWIIPGDKSKTNTLREEPLSDTRKVYIRIMRKVKNKSVADVVEALIGAFLSSTGGEIAALKFMSWIGIKVDFDFIPYERPFKVNAENLINVKHFESLLNYKFHDPSLLLEALTHGSYMLPQSPRCYQRLEFLGDSVLDYLMTVHLYNKYPGMSPGFLTDMRSASVNNDCYARCSVKAELHKHILHLSSKLHKDIVRTLQSFKTLSSETTFGWESETSFPKVLGDVIESLAGAILVDSGYNKERVFESIRPLLEPLITPETVMLHPVRELNELCQKEHYINRKPIVSRHNGVASLTIEVEVDGTVYKHTSSASGKEIAKKVACKEVLKLLKKIHLNEASGKG 1395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4087514 4096223 - Conep05aG0098500.1 Cone5ag0959 437977

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0959 1395 Pfam Ribonuclease III domain 990 1105 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Cone5ag0959 1395 Pfam Ribonuclease III domain 1181 1292 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Cone5ag0959 1395 CDD RIBOc 975 1127 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Cone5ag0959 1395 ProSitePatterns Ribonuclease III family signature. 1181 1189 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Cone5ag0959 1395 Pfam Dicer dimerisation domain 555 630 IPR005034 GO:0016891(InterPro)
Cone5ag0959 1395 Gene3D - 362 517 IPR027417 -
Cone5ag0959 1395 Pfam PAZ domain 823 938 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Cone5ag0959 1395 FunFam Endoribonuclease dicer-like 1 550 638 - -
Cone5ag0959 1395 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1318 1385 IPR014720 -
Cone5ag0959 1395 FunFam Endoribonuclease Dicer homolog 2 964 1120 - -
Cone5ag0959 1395 Pfam Helicase conserved C-terminal domain 379 485 IPR001650 -
Cone5ag0959 1395 ProSiteProfiles Ribonuclease III family domain profile. 1145 1292 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Cone5ag0959 1395 CDD RIBOc 1160 1314 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Cone5ag0959 1395 FunFam Endoribonuclease dicer-like 1 1139 1313 - -
Cone5ag0959 1395 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 555 637 IPR005034 GO:0016891(InterPro)
Cone5ag0959 1395 Gene3D Ribonuclease III domain 969 1120 IPR036389 GO:0004525(InterPro)|GO:0006396(InterPro)
Cone5ag0959 1395 SUPERFAMILY PAZ domain 821 924 IPR036085 GO:0005515(InterPro)
Cone5ag0959 1395 ProSiteProfiles PAZ domain profile. 813 926 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Cone5ag0959 1395 SMART ultradead3 14 229 IPR014001 -
Cone5ag0959 1395 SMART riboneu5 1160 1315 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Cone5ag0959 1395 SMART riboneu5 972 1130 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Cone5ag0959 1395 FunFam Endoribonuclease dicer-like 1 358 522 - -
Cone5ag0959 1395 SUPERFAMILY RNase III domain-like 974 1128 IPR036389 GO:0004525(InterPro)|GO:0006396(InterPro)
Cone5ag0959 1395 Gene3D - 1317 1386 - -
Cone5ag0959 1395 ProSiteProfiles Ribonuclease III family domain profile. 976 1108 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Cone5ag0959 1395 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 371 535 IPR001650 -
Cone5ag0959 1395 Gene3D Dicer dimerisation domain 550 638 IPR038248 -
Cone5ag0959 1395 Coils Coil 246 266 - -
Cone5ag0959 1395 SMART PAZ_2_a_3 788 952 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Cone5ag0959 1395 SUPERFAMILY dsRNA-binding domain-like 1274 1385 - -
Cone5ag0959 1395 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 65 508 IPR027417 -
Cone5ag0959 1395 SMART helicmild6 401 488 IPR001650 -
Cone5ag0959 1395 PANTHER DICER-RELATED 31 1388 - GO:0003723(PANTHER)|GO:0004525(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0030422(PANTHER)
Cone5ag0959 1395 SUPERFAMILY RNase III domain-like 1144 1314 IPR036389 GO:0004525(InterPro)|GO:0006396(InterPro)
Cone5ag0959 1395 Pfam DEAD/DEAH box helicase 20 186 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Cone5ag0959 1395 Gene3D paz domain 804 929 - -
Cone5ag0959 1395 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 25 190 IPR014001 -
Cone5ag0959 1395 FunFam Endoribonuclease dicer-like protein 14 255 - -
Cone5ag0959 1395 Gene3D Ribonuclease III domain 1141 1316 IPR036389 GO:0004525(InterPro)|GO:0006396(InterPro)
Cone5ag0959 1395 CDD DEXHc_dicer 18 218 - -
Cone5ag0959 1395 Gene3D - 15 258 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0959 K11592 - - csv:101208698 1840.47
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0986 Cone-Chr14:8130956 Cone5ag0959 Cone-Chr5:4087514 6.53E-22 dispersed
Cone20ag0298 Cone-Chr20:1330937 Cone5ag0959 Cone-Chr5:4087514 4.38E-24 dispersed
Cone4ag0619 Cone-Chr4:2850462 Cone5ag0959 Cone-Chr5:4087514 5.34E-203 dispersed
Cone17ag0725 Cone-Chr17:5237963 Cone5ag0959 Cone-Chr5:4087514 6.77E-18 transposed
Cone1ag0853 Cone-Chr1:54283094 Cone5ag0959 Cone-Chr5:4087514 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g891 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone5ag0959 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006712 0 4 2 4 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 2 1 1 1 1 2 0 1 1 38