Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone5ag0961 | ATGGACTCGGAGGATGAGTTCGACATGCATGATGCTCACGACGATGACGATGACTATGACAACGACAACGAATTCTACAGCGGCGCCGATGATGATGCCGCCGCCGTAGACAGCGACGATGCTGATGCCGCCGATTACGTTTTCATTGTTAATGATTCGGATGATTCCGATGAAATCGTCTCGCATCGGCGCCAGAACTTTACCATCTTGAGTGAGGCAGAGATACATCAGTGCCAAGAGGCTGATATAATGAGAATATCAACTGTGCTTTCCATTTCAAAAGTTGAGGCTAGCATCCTGCTTCGCTATTACAATTGGACTGTTAGTAAAGTTCATGATGAGTGGTTTGCAGATGAAGAAAAGGTTCGTCGGACGGTTGGGTTACTAGAGAGACCAATTGTTGATTATTCAAATAACAGAGAACTAACATGTGGTATCTGTTTTGAAACCTATCCTCGTGATAGGATTCATGCTGCTGCCTGTGGTCATCCATTTTGCAGTATATGTTGGGCAGGCTATATTAGCACATCCATTAATGATGGTCCGGGATGTCTGATGTTGCGATGCCCTGATCCATCATGTGGTGCTTCTGTCGGGCATGATATGATTAACTTGCTGGCTTCTAGTGAAGATAAGAAGAAGTATAGTCGCTACTTCATCAGATCTTATGTTGAAAACAACAGGAAGGTCAAATGGTGTCCGGCTCCTGGATGTGATTATGCTGTGGATTTTATTGTTGGCAGCAGAAGCTATGATGTTACTTGCCGCTGTTCATTTAGCTTTTGTTGGAATTGTACCAAGGAAGCTCATCGCCCAGTTGATTGTAGCACTGTGGCCAAATGGATATTGAAGAATAGCGCCGAGTCAGAAAATATGAATTGGATTTTGGCTAATTCGAAGCCTTGTCCAAAGTGCAAGCGGCCGATAGAGAAAAATCAAGGGTGTATGCATATTACTTGCACACCACCGTGTAAATTTGAGTTTTGCTGGCTTTGCCTCGGGGCATGGTCGGACCATGGTGAGAGAACTGGGGGGTTTTATGCATGTAACCGTTATGAAACAGCTAAGCAGGAGGGTGTGTATGATGATGCTGAAAAGCGTAGAGAGATGGCCAAGAATTCTCTGGAGAGGTACACCCATTATTATGAAAGATGGGCAACAAATCAGTCGTCTAGGCAAAAGGCACTGGGTGACCTCTATCAAATGCAAACAGTCCATCTGGAGAAGCTCAGTGACATACAGTGCCAACCCGAGTCTCAGCTGAAGTTCATAACTGAAGCCTGGCTTCAGATAGTTGAGTGTAGGAGAGTTCTTAAATGGACTTATGCATATGGATATTATCTTCCAGAACATGAACATGGCAAGAGACAGTTCTTTGAGTATTTGCAAGGTGAGGCCGAGTCTGGCTTGGAGAGGCTGCATCAATGTGCTGAGAAGGAGCTACAGGTTCACCTCAATGCAGAAGGCCCATCAAAAGATTTCAATGAGTTCCGCACCAAACTTGCTGGGCTAACCAGTGTAACTAGAAACTACTTCAAGAACTTGGTGCGAGCACTGGAGAACGGCCTCTCAGATGTAGACTCACGTGGTGGATGTAGCAGAATGGCAGGTTCAAAGAGCATGGGAGGTGGCATTAGTAGGGGTAAAAATGGAAAAGGCAAGGGCACATCTTCTAGAACAAGCAGTTCAAGTCGAAATATTGATGTCTCAGATCACTGGTCTTGTGAACATTGCACCTTTGCCAATGCCAGGTCAGCAGCCTTCTGCCAGATGTGCCATCAGCAGAGGGAATCGGCATCCAAGCGGAAGAACGGAGGGATTTTACGTATGGAAGGAAAAGACTATATGATGTTGTAA | 1857 | 45.34 | MDSEDEFDMHDAHDDDDDYDNDNEFYSGADDDAAAVDSDDADAADYVFIVNDSDDSDEIVSHRRQNFTILSEAEIHQCQEADIMRISTVLSISKVEASILLRYYNWTVSKVHDEWFADEEKVRRTVGLLERPIVDYSNNRELTCGICFETYPRDRIHAAACGHPFCSICWAGYISTSINDGPGCLMLRCPDPSCGASVGHDMINLLASSEDKKKYSRYFIRSYVENNRKVKWCPAPGCDYAVDFIVGSRSYDVTCRCSFSFCWNCTKEAHRPVDCSTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQSSRQKALGDLYQMQTVHLEKLSDIQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPEHEHGKRQFFEYLQGEAESGLERLHQCAEKELQVHLNAEGPSKDFNEFRTKLAGLTSVTRNYFKNLVRALENGLSDVDSRGGCSRMAGSKSMGGGISRGKNGKGKGTSSRTSSSSRNIDVSDHWSCEHCTFANARSAAFCQMCHQQRESASKRKNGGILRMEGKDYMML | 618 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 4100867 | 4107361 | - | Conep05aG0098700.1 | Cone5ag0961 | 437979 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone5ag0961 | 618 | ProSitePatterns | Zinc finger RanBP2-type signature. | 573 | 592 | IPR001876 | - | |
| Cone5ag0961 | 618 | Pfam | IBR domain, a half RING-finger domain | 213 | 275 | IPR002867 | GO:0008270(InterPro) | |
| Cone5ag0961 | 618 | ProSiteProfiles | TRIAD supradomain profile. | 140 | 353 | IPR044066 | - | |
| Cone5ag0961 | 618 | MobiDBLite | consensus disorder prediction | 1 | 34 | - | - | |
| Cone5ag0961 | 618 | FunFam | RBR-type E3 ubiquitin transferase | 276 | 526 | - | - | |
| Cone5ag0961 | 618 | FunFam | RBR-type E3 ubiquitin transferase | 138 | 227 | - | - | |
| Cone5ag0961 | 618 | Gene3D | - | 568 | 611 | - | - | |
| Cone5ag0961 | 618 | Gene3D | - | 271 | 526 | - | - | |
| Cone5ag0961 | 618 | SUPERFAMILY | RING/U-box | 214 | 282 | - | - | |
| Cone5ag0961 | 618 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 81 | 403 | IPR031127 | GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER) | |
| Cone5ag0961 | 618 | Pfam | Ariadne domain | 362 | 571 | IPR045840 | - | |
| Cone5ag0961 | 618 | MobiDBLite | consensus disorder prediction | 551 | 566 | - | - | |
| Cone5ag0961 | 618 | CDD | Rcat_RBR_ARI7-like | 298 | 352 | - | - | |
| Cone5ag0961 | 618 | SUPERFAMILY | Ran binding protein zinc finger-like | 570 | 596 | IPR036443 | - | |
| Cone5ag0961 | 618 | CDD | RING-HC_ARI6-like | 141 | 202 | - | - | |
| Cone5ag0961 | 618 | SMART | ibrneu5 | 213 | 275 | IPR002867 | GO:0008270(InterPro) | |
| Cone5ag0961 | 618 | SMART | ibrneu5 | 279 | 349 | IPR002867 | GO:0008270(InterPro) | |
| Cone5ag0961 | 618 | SUPERFAMILY | RING/U-box | 138 | 225 | - | - | |
| Cone5ag0961 | 618 | ProSiteProfiles | Zinc finger RING-type profile. | 144 | 188 | IPR001841 | - | |
| Cone5ag0961 | 618 | Pfam | E3 ubiquitin-protein ligase ARIH1, UBA-like domain | 79 | 116 | IPR048962 | - | |
| Cone5ag0961 | 618 | MobiDBLite | consensus disorder prediction | 535 | 566 | - | - | |
| Cone5ag0961 | 618 | SUPERFAMILY | RING/U-box | 294 | 342 | - | - | |
| Cone5ag0961 | 618 | ProSiteProfiles | Zinc finger RanBP2 type profile. | 569 | 598 | IPR001876 | - | |
| Cone5ag0961 | 618 | CDD | BRcat_RBR_ANKIB1 | 220 | 284 | - | - | |
| Cone5ag0961 | 618 | Pfam | IBR domain | 297 | 337 | - | - | |
| Cone5ag0961 | 618 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 138 | 226 | IPR013083 | - | |
| Cone5ag0961 | 618 | SMART | zf_4 | 571 | 595 | IPR001876 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone3ag1137 | Cone-Chr3:29958169 | Cone5ag0961 | Cone-Chr5:4100867 | 1.58E-53 | dispersed | |
| Cone1ag0851 | Cone-Chr1:54266495 | Cone5ag0961 | Cone-Chr5:4100867 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone5ag0961 | K11968 | - | rcu:8274237 | 1004.97 |