Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0961 ATGGACTCGGAGGATGAGTTCGACATGCATGATGCTCACGACGATGACGATGACTATGACAACGACAACGAATTCTACAGCGGCGCCGATGATGATGCCGCCGCCGTAGACAGCGACGATGCTGATGCCGCCGATTACGTTTTCATTGTTAATGATTCGGATGATTCCGATGAAATCGTCTCGCATCGGCGCCAGAACTTTACCATCTTGAGTGAGGCAGAGATACATCAGTGCCAAGAGGCTGATATAATGAGAATATCAACTGTGCTTTCCATTTCAAAAGTTGAGGCTAGCATCCTGCTTCGCTATTACAATTGGACTGTTAGTAAAGTTCATGATGAGTGGTTTGCAGATGAAGAAAAGGTTCGTCGGACGGTTGGGTTACTAGAGAGACCAATTGTTGATTATTCAAATAACAGAGAACTAACATGTGGTATCTGTTTTGAAACCTATCCTCGTGATAGGATTCATGCTGCTGCCTGTGGTCATCCATTTTGCAGTATATGTTGGGCAGGCTATATTAGCACATCCATTAATGATGGTCCGGGATGTCTGATGTTGCGATGCCCTGATCCATCATGTGGTGCTTCTGTCGGGCATGATATGATTAACTTGCTGGCTTCTAGTGAAGATAAGAAGAAGTATAGTCGCTACTTCATCAGATCTTATGTTGAAAACAACAGGAAGGTCAAATGGTGTCCGGCTCCTGGATGTGATTATGCTGTGGATTTTATTGTTGGCAGCAGAAGCTATGATGTTACTTGCCGCTGTTCATTTAGCTTTTGTTGGAATTGTACCAAGGAAGCTCATCGCCCAGTTGATTGTAGCACTGTGGCCAAATGGATATTGAAGAATAGCGCCGAGTCAGAAAATATGAATTGGATTTTGGCTAATTCGAAGCCTTGTCCAAAGTGCAAGCGGCCGATAGAGAAAAATCAAGGGTGTATGCATATTACTTGCACACCACCGTGTAAATTTGAGTTTTGCTGGCTTTGCCTCGGGGCATGGTCGGACCATGGTGAGAGAACTGGGGGGTTTTATGCATGTAACCGTTATGAAACAGCTAAGCAGGAGGGTGTGTATGATGATGCTGAAAAGCGTAGAGAGATGGCCAAGAATTCTCTGGAGAGGTACACCCATTATTATGAAAGATGGGCAACAAATCAGTCGTCTAGGCAAAAGGCACTGGGTGACCTCTATCAAATGCAAACAGTCCATCTGGAGAAGCTCAGTGACATACAGTGCCAACCCGAGTCTCAGCTGAAGTTCATAACTGAAGCCTGGCTTCAGATAGTTGAGTGTAGGAGAGTTCTTAAATGGACTTATGCATATGGATATTATCTTCCAGAACATGAACATGGCAAGAGACAGTTCTTTGAGTATTTGCAAGGTGAGGCCGAGTCTGGCTTGGAGAGGCTGCATCAATGTGCTGAGAAGGAGCTACAGGTTCACCTCAATGCAGAAGGCCCATCAAAAGATTTCAATGAGTTCCGCACCAAACTTGCTGGGCTAACCAGTGTAACTAGAAACTACTTCAAGAACTTGGTGCGAGCACTGGAGAACGGCCTCTCAGATGTAGACTCACGTGGTGGATGTAGCAGAATGGCAGGTTCAAAGAGCATGGGAGGTGGCATTAGTAGGGGTAAAAATGGAAAAGGCAAGGGCACATCTTCTAGAACAAGCAGTTCAAGTCGAAATATTGATGTCTCAGATCACTGGTCTTGTGAACATTGCACCTTTGCCAATGCCAGGTCAGCAGCCTTCTGCCAGATGTGCCATCAGCAGAGGGAATCGGCATCCAAGCGGAAGAACGGAGGGATTTTACGTATGGAAGGAAAAGACTATATGATGTTGTAA 1857 45.34 MDSEDEFDMHDAHDDDDDYDNDNEFYSGADDDAAAVDSDDADAADYVFIVNDSDDSDEIVSHRRQNFTILSEAEIHQCQEADIMRISTVLSISKVEASILLRYYNWTVSKVHDEWFADEEKVRRTVGLLERPIVDYSNNRELTCGICFETYPRDRIHAAACGHPFCSICWAGYISTSINDGPGCLMLRCPDPSCGASVGHDMINLLASSEDKKKYSRYFIRSYVENNRKVKWCPAPGCDYAVDFIVGSRSYDVTCRCSFSFCWNCTKEAHRPVDCSTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQSSRQKALGDLYQMQTVHLEKLSDIQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPEHEHGKRQFFEYLQGEAESGLERLHQCAEKELQVHLNAEGPSKDFNEFRTKLAGLTSVTRNYFKNLVRALENGLSDVDSRGGCSRMAGSKSMGGGISRGKNGKGKGTSSRTSSSSRNIDVSDHWSCEHCTFANARSAAFCQMCHQQRESASKRKNGGILRMEGKDYMML 618
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 4100867 4107361 - Conep05aG0098700.1 Cone5ag0961 437979
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0961 618 ProSitePatterns Zinc finger RanBP2-type signature. 573 592 IPR001876 -
Cone5ag0961 618 Pfam IBR domain, a half RING-finger domain 213 275 IPR002867 GO:0008270(InterPro)
Cone5ag0961 618 ProSiteProfiles TRIAD supradomain profile. 140 353 IPR044066 -
Cone5ag0961 618 MobiDBLite consensus disorder prediction 1 34 - -
Cone5ag0961 618 FunFam RBR-type E3 ubiquitin transferase 276 526 - -
Cone5ag0961 618 FunFam RBR-type E3 ubiquitin transferase 138 227 - -
Cone5ag0961 618 Gene3D - 568 611 - -
Cone5ag0961 618 Gene3D - 271 526 - -
Cone5ag0961 618 SUPERFAMILY RING/U-box 214 282 - -
Cone5ag0961 618 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 81 403 IPR031127 GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER)
Cone5ag0961 618 Pfam Ariadne domain 362 571 IPR045840 -
Cone5ag0961 618 MobiDBLite consensus disorder prediction 551 566 - -
Cone5ag0961 618 CDD Rcat_RBR_ARI7-like 298 352 - -
Cone5ag0961 618 SUPERFAMILY Ran binding protein zinc finger-like 570 596 IPR036443 -
Cone5ag0961 618 CDD RING-HC_ARI6-like 141 202 - -
Cone5ag0961 618 SMART ibrneu5 213 275 IPR002867 GO:0008270(InterPro)
Cone5ag0961 618 SMART ibrneu5 279 349 IPR002867 GO:0008270(InterPro)
Cone5ag0961 618 SUPERFAMILY RING/U-box 138 225 - -
Cone5ag0961 618 ProSiteProfiles Zinc finger RING-type profile. 144 188 IPR001841 -
Cone5ag0961 618 Pfam E3 ubiquitin-protein ligase ARIH1, UBA-like domain 79 116 IPR048962 -
Cone5ag0961 618 MobiDBLite consensus disorder prediction 535 566 - -
Cone5ag0961 618 SUPERFAMILY RING/U-box 294 342 - -
Cone5ag0961 618 ProSiteProfiles Zinc finger RanBP2 type profile. 569 598 IPR001876 -
Cone5ag0961 618 CDD BRcat_RBR_ANKIB1 220 284 - -
Cone5ag0961 618 Pfam IBR domain 297 337 - -
Cone5ag0961 618 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 138 226 IPR013083 -
Cone5ag0961 618 SMART zf_4 571 595 IPR001876 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag1137 Cone-Chr3:29958169 Cone5ag0961 Cone-Chr5:4100867 1.58E-53 dispersed
Cone1ag0851 Cone-Chr1:54266495 Cone5ag0961 Cone-Chr5:4100867 0 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0961 K11968 - rcu:8274237 1004.97