Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0961 ATGGACTCGGAGGATGAGTTCGACATGCATGATGCTCACGACGATGACGATGACTATGACAACGACAACGAATTCTACAGCGGCGCCGATGATGATGCCGCCGCCGTAGACAGCGACGATGCTGATGCCGCCGATTACGTTTTCATTGTTAATGATTCGGATGATTCCGATGAAATCGTCTCGCATCGGCGCCAGAACTTTACCATCTTGAGTGAGGCAGAGATACATCAGTGCCAAGAGGCTGATATAATGAGAATATCAACTGTGCTTTCCATTTCAAAAGTTGAGGCTAGCATCCTGCTTCGCTATTACAATTGGACTGTTAGTAAAGTTCATGATGAGTGGTTTGCAGATGAAGAAAAGGTTCGTCGGACGGTTGGGTTACTAGAGAGACCAATTGTTGATTATTCAAATAACAGAGAACTAACATGTGGTATCTGTTTTGAAACCTATCCTCGTGATAGGATTCATGCTGCTGCCTGTGGTCATCCATTTTGCAGTATATGTTGGGCAGGCTATATTAGCACATCCATTAATGATGGTCCGGGATGTCTGATGTTGCGATGCCCTGATCCATCATGTGGTGCTTCTGTCGGGCATGATATGATTAACTTGCTGGCTTCTAGTGAAGATAAGAAGAAGTATAGTCGCTACTTCATCAGATCTTATGTTGAAAACAACAGGAAGGTCAAATGGTGTCCGGCTCCTGGATGTGATTATGCTGTGGATTTTATTGTTGGCAGCAGAAGCTATGATGTTACTTGCCGCTGTTCATTTAGCTTTTGTTGGAATTGTACCAAGGAAGCTCATCGCCCAGTTGATTGTAGCACTGTGGCCAAATGGATATTGAAGAATAGCGCCGAGTCAGAAAATATGAATTGGATTTTGGCTAATTCGAAGCCTTGTCCAAAGTGCAAGCGGCCGATAGAGAAAAATCAAGGGTGTATGCATATTACTTGCACACCACCGTGTAAATTTGAGTTTTGCTGGCTTTGCCTCGGGGCATGGTCGGACCATGGTGAGAGAACTGGGGGGTTTTATGCATGTAACCGTTATGAAACAGCTAAGCAGGAGGGTGTGTATGATGATGCTGAAAAGCGTAGAGAGATGGCCAAGAATTCTCTGGAGAGGTACACCCATTATTATGAAAGATGGGCAACAAATCAGTCGTCTAGGCAAAAGGCACTGGGTGACCTCTATCAAATGCAAACAGTCCATCTGGAGAAGCTCAGTGACATACAGTGCCAACCCGAGTCTCAGCTGAAGTTCATAACTGAAGCCTGGCTTCAGATAGTTGAGTGTAGGAGAGTTCTTAAATGGACTTATGCATATGGATATTATCTTCCAGAACATGAACATGGCAAGAGACAGTTCTTTGAGTATTTGCAAGGTGAGGCCGAGTCTGGCTTGGAGAGGCTGCATCAATGTGCTGAGAAGGAGCTACAGGTTCACCTCAATGCAGAAGGCCCATCAAAAGATTTCAATGAGTTCCGCACCAAACTTGCTGGGCTAACCAGTGTAACTAGAAACTACTTCAAGAACTTGGTGCGAGCACTGGAGAACGGCCTCTCAGATGTAGACTCACGTGGTGGATGTAGCAGAATGGCAGGTTCAAAGAGCATGGGAGGTGGCATTAGTAGGGGTAAAAATGGAAAAGGCAAGGGCACATCTTCTAGAACAAGCAGTTCAAGTCGAAATATTGATGTCTCAGATCACTGGTCTTGTGAACATTGCACCTTTGCCAATGCCAGGTCAGCAGCCTTCTGCCAGATGTGCCATCAGCAGAGGGAATCGGCATCCAAGCGGAAGAACGGAGGGATTTTACGTATGGAAGGAAAAGACTATATGATGTTGTAA 1857 45.34 MDSEDEFDMHDAHDDDDDYDNDNEFYSGADDDAAAVDSDDADAADYVFIVNDSDDSDEIVSHRRQNFTILSEAEIHQCQEADIMRISTVLSISKVEASILLRYYNWTVSKVHDEWFADEEKVRRTVGLLERPIVDYSNNRELTCGICFETYPRDRIHAAACGHPFCSICWAGYISTSINDGPGCLMLRCPDPSCGASVGHDMINLLASSEDKKKYSRYFIRSYVENNRKVKWCPAPGCDYAVDFIVGSRSYDVTCRCSFSFCWNCTKEAHRPVDCSTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQSSRQKALGDLYQMQTVHLEKLSDIQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPEHEHGKRQFFEYLQGEAESGLERLHQCAEKELQVHLNAEGPSKDFNEFRTKLAGLTSVTRNYFKNLVRALENGLSDVDSRGGCSRMAGSKSMGGGISRGKNGKGKGTSSRTSSSSRNIDVSDHWSCEHCTFANARSAAFCQMCHQQRESASKRKNGGILRMEGKDYMML 618
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4100867 4107361 - Conep05aG0098700.1 Cone5ag0961 437979

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0961 618 ProSitePatterns Zinc finger RanBP2-type signature. 573 592 IPR001876 -
Cone5ag0961 618 Pfam IBR domain, a half RING-finger domain 213 275 IPR002867 GO:0008270(InterPro)
Cone5ag0961 618 ProSiteProfiles TRIAD supradomain profile. 140 353 IPR044066 -
Cone5ag0961 618 MobiDBLite consensus disorder prediction 1 34 - -
Cone5ag0961 618 FunFam RBR-type E3 ubiquitin transferase 276 526 - -
Cone5ag0961 618 FunFam RBR-type E3 ubiquitin transferase 138 227 - -
Cone5ag0961 618 Gene3D - 568 611 - -
Cone5ag0961 618 Gene3D - 271 526 - -
Cone5ag0961 618 SUPERFAMILY RING/U-box 214 282 - -
Cone5ag0961 618 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 81 403 IPR031127 GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER)
Cone5ag0961 618 Pfam Ariadne domain 362 571 IPR045840 -
Cone5ag0961 618 MobiDBLite consensus disorder prediction 551 566 - -
Cone5ag0961 618 CDD Rcat_RBR_ARI7-like 298 352 - -
Cone5ag0961 618 SUPERFAMILY Ran binding protein zinc finger-like 570 596 IPR036443 -
Cone5ag0961 618 CDD RING-HC_ARI6-like 141 202 - -
Cone5ag0961 618 SMART ibrneu5 213 275 IPR002867 GO:0008270(InterPro)
Cone5ag0961 618 SMART ibrneu5 279 349 IPR002867 GO:0008270(InterPro)
Cone5ag0961 618 SUPERFAMILY RING/U-box 138 225 - -
Cone5ag0961 618 ProSiteProfiles Zinc finger RING-type profile. 144 188 IPR001841 -
Cone5ag0961 618 Pfam E3 ubiquitin-protein ligase ARIH1, UBA-like domain 79 116 IPR048962 -
Cone5ag0961 618 MobiDBLite consensus disorder prediction 535 566 - -
Cone5ag0961 618 SUPERFAMILY RING/U-box 294 342 - -
Cone5ag0961 618 ProSiteProfiles Zinc finger RanBP2 type profile. 569 598 IPR001876 -
Cone5ag0961 618 CDD BRcat_RBR_ANKIB1 220 284 - -
Cone5ag0961 618 Pfam IBR domain 297 337 - -
Cone5ag0961 618 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 138 226 IPR013083 -
Cone5ag0961 618 SMART zf_4 571 595 IPR001876 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0961 K11968 - - rcu:8274237 1004.97
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag1137 Cone-Chr3:29958169 Cone5ag0961 Cone-Chr5:4100867 1.58E-53 dispersed
Cone1ag0851 Cone-Chr1:54266495 Cone5ag0961 Cone-Chr5:4100867 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone10ag1148 . 165 591 ARIADNE family AT4G34370 70.0 7.8e-174 607.4
Cone3ag1137 . 166 605 ARIADNE family AT4G34370 66.7 2.2e-168 589.3
Cone10ag1148 . 59 543 ARIADNE family AT2G16090 74.6 1.5e-213 739.6
Cone3ag1137 . 59 543 ARIADNE family AT2G16090 73.4 5.8e-210 727.6
Cone10ag1148 . 26 546 ARIADNE family AT3G27710 60.0 2.2e-178 622.9
Cone3ag1137 . 26 545 ARIADNE family AT3G27710 59.2 1.4e-175 613.6
Cone10ag1148 . 45 523 ARIADNE family AT3G27720 53.2 2.5e-136 483.0
Cone3ag1137 . 45 524 ARIADNE family AT3G27720 52.3 2.8e-135 479.6
Cone5ag0961 . 65 539 ARIADNE family AT1G05890 72.8 1.3e-219 760.0
Cone1ag0851 . 63 537 ARIADNE family AT1G05890 72.6 4.9e-219 758.1
Cone14ag0574 . 40 512 ARIADNE family AT1G05890 74.0 6.0e-217 751.1
Cone15ag0588 . 1 514 ARIADNE family AT1G05890 64.0 1.2e-209 726.9
Cone1ag0851 . 23 594 ARIADNE family AT1G65430 72.8 1.7e-256 882.5
Cone5ag0961 . 22 596 ARIADNE family AT1G65430 71.9 9.1e-255 876.7
Cone14ag0574 . 7 566 ARIADNE family AT1G65430 69.7 1.1e-239 826.6
Cone15ag0588 . 16 574 ARIADNE family AT1G65430 67.8 1.8e-231 799.3
Cone5ag0961 . 49 458 ARIADNE family AT2G31780 54.9 6.6e-144 508.1
Cone1ag0851 . 47 456 ARIADNE family AT2G31780 54.1 3.6e-142 502.3
Cone14ag0574 . 36 432 ARIADNE family AT2G31780 56.9 5.8e-140 495.0
Cone15ag0588 . 1 439 ARIADNE family AT2G31780 51.9 7.8e-137 484.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001364 2 4 3 1 2 2 3 3 2 3 2 2 3 2 2 3 2 4 2 3 2 2 3 2 2 2 2 3 3 1 72