Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0965 ATGGCATCATCTTCATCAAACTCCCCATGCGCAGCCTGCAAGTTTCTTCGCCGGAAGTGCCAACCTGAGTGCGTCTTCGCCCCCTACTTCCCGCCGGACCAGCCGCAAAAGTTCGCAAACGTTCACAAAGTGTTCGGAGCAAGCAACGTAAGCAAGCTACTTAACGAACTGCACCCTCACCAGAGAGAAGACGCGGTCAACTCTCTCGCCTACGAAGCCGATATGCGTCTCCGGGACCCGGTCTACGGCTGCGTCGGTGTAATCTCTCTCCTCCAGCACCAGCTCCGGCAGCTTCAGATGGACCTCACCTGCGCTAAGTCCGAGCTCTCTAAGTACCAAAATTTGGGCTTGACTAGCCACCATAGCCTCATAACGGCGCAGAATGGTCATCTAGGGTTTAATCTGATTGGTGGGGTCAACGCTGGCAATTGGCCGGAACAGCAGAACGGCCACTACCATCATCACCAGTTGTTTCCGAGGGACCCACAGCAGATCGTGATGAGGAGTTATGATCATAACGGGTCGAATCATTATGATGGAGGAAGTGCCCTTTTGGCTATGAATGTTTCGGCGACTATCGGTCAGCTCAGTCAGTTCCAGCAACCGGCTAGGGCTGCTGCCGAGGATGATCACCGCCGTACCATTGATCCCTCTTAG 657 54.34 MASSSSNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVSKLLNELHPHQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQMDLTCAKSELSKYQNLGLTSHHSLITAQNGHLGFNLIGGVNAGNWPEQQNGHYHHHQLFPRDPQQIVMRSYDHNGSNHYDGGSALLAMNVSATIGQLSQFQQPARAAAEDDHRRTIDPS 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4129039 4129695 - Conep05aG0099100.1 Cone5ag0965 437983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0965 218 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 7 153 - -
Cone5ag0965 218 Pfam Lateral organ boundaries (LOB) domain 9 106 IPR004883 -
Cone5ag0965 218 Coils Coil 88 115 - -
Cone5ag0965 218 ProSiteProfiles LOB domain profile. 8 109 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone2ag0868 Cone-Chr2:34633696 Cone5ag0965 Cone-Chr5:4129039 1.51E-30 dispersed
Cone5ag0965 Cone-Chr5:4129039 Cone6ag1377 Cone-Chr6:11057520 2.37E-56 dispersed
Cone1ag0847 Cone-Chr1:54241388 Cone5ag0965 Cone-Chr5:4129039 8.51E-160 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46163 PF03226 Yippee-Mis18 1.10E-14 CL0080 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0965 - - - 0.0