Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0986 ATGGCTGATGCTAGTCCAAGGACCGACATCTCCACAGATGGAGACACAGATGAAAAGAACCAGAGGTTTGATATGGGTCAAAATACTCTAGTGGCTTATGATTCCAGTGACAGATCGAAAGATAGATCTGATCAGAAGACTCTACGTAGGCTTGCACAAAATCGTGAGGCTGCTAGAAAAAGCCGGTTGAGGAAAAAAGCATATGTGCAACAACTAGAAAGTAGTCGTTTAAAGTTAACCCAGTTGGAGCAAGAGCTTCAACGAGCTCGACAACAGGGTATCTTCATATCAAGTGGAGCAGACCAGCCCCATTCAATGAGTGGAAATGGAGCCTTGACATTTGATGTAGAATATGCACGTTGGCTGGAGGAGCAAAACCGTCAAGTCAACGAACTGAGAGCGGCTGTCAACAATCATGCTGGTGATACGGAACTTCGTATTATTGTGGATGGCATCTTAGCTCACTATGATGAGATATTTAGGCTCAAGAGCAATGCAGCCAAAGCCGATGTATTTCATCTATTGTCCGGCATGTGGAAAACACCGGCTGAGAGATGCTTCTTATGGCTCGGTGGCTTCCGTTCATCAGATCTCCTTAAGCTTCTGGTAAATCAGTTGGAGCCTTTAACGGAGCAGCAATTGGTTGGTCTCACTAACTTGCAACAATCATCACAACAGGCCGAGGATGCCTTATCACAGGGGATGGAGGCGTTGCAACAGTCATTGGCCGAGACATTATCCAGTGGGTCCCTCGGTTCCTCGGGTTCATCCACCAATGTGGCTAACTACATGGGTCAGATGGCCATGGCCATGGGTAAACTAGGCACCCTTGAAGGCTTTATTTGCCAGGCTGACAATTTGCGGCAACAAACACTGCAACAAATGCATCGGATTTTGACAACCCGTCAATCAGCTCGAGCGCTTCTTGCTATACAGGATTATTTCTCAAGGTTACGGGCTCTTAGTTCGCTCTGGCTAGCCCGCCCAAAAGAGTAG 996 47.09 MADASPRTDISTDGDTDEKNQRFDMGQNTLVAYDSSDRSKDRSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSGADQPHSMSGNGALTFDVEYARWLEEQNRQVNELRAAVNNHAGDTELRIIVDGILAHYDEIFRLKSNAAKADVFHLLSGMWKTPAERCFLWLGGFRSSDLLKLLVNQLEPLTEQQLVGLTNLQQSSQQAEDALSQGMEALQQSLAETLSSGSLGSSGSSTNVANYMGQMAMAMGKLGTLEGFICQADNLRQQTLQQMHRILTTRQSARALLAIQDYFSRLRALSSLWLARPKE 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4227304 4232012 - Conep05aG0101200.1 Cone5ag0986 438004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0986 331 SUPERFAMILY Leucine zipper domain 46 89 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag0986 331 Coils Coil 65 92 - -
Cone5ag0986 331 MobiDBLite consensus disorder prediction 1 48 - -
Cone5ag0986 331 PANTHER TRANSCRIPTION FACTOR TGA9 22 331 - -
Cone5ag0986 331 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 49 64 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag0986 331 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 44 88 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag0986 331 Coils Coil 122 142 - -
Cone5ag0986 331 Gene3D - 45 95 - -
Cone5ag0986 331 Pfam bZIP transcription factor 46 86 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag0986 331 ProSiteProfiles DOG1 domain profile. 111 328 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cone5ag0986 331 SMART brlzneu 42 105 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag0986 331 FunFam BZIP family transcription factor 45 94 - -
Cone5ag0986 331 Pfam Seed dormancy control 128 203 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0011 Cone-Chr10:113492 Cone5ag0986 Cone-Chr5:4227304 2.96E-168 dispersed
Cone13ag0546 Cone-Chr13:5710710 Cone5ag0986 Cone-Chr5:4227304 8.61E-119 dispersed
Cone13ag0845 Cone-Chr13:7594448 Cone5ag0986 Cone-Chr5:4227304 1.72E-148 dispersed
Cone18ag0202 Cone-Chr18:998637 Cone5ag0986 Cone-Chr5:4227304 6.34E-117 dispersed
Cone19ag0496 Cone-Chr19:4105973 Cone5ag0986 Cone-Chr5:4227304 2.75E-115 dispersed
Cone19ag0849 Cone-Chr19:6680349 Cone5ag0986 Cone-Chr5:4227304 9.16E-151 dispersed
Cone3ag0017 Cone-Chr3:109811 Cone5ag0986 Cone-Chr5:4227304 1.56E-169 dispersed
Cone3ag0081 Cone-Chr3:472652 Cone5ag0986 Cone-Chr5:4227304 3.53E-115 dispersed
Cone5ag0986 Cone-Chr5:4227304 Cone5ag1347 Cone-Chr5:8085681 1.91E-99 dispersed
Cone1ag0832 Cone-Chr1:54142561 Cone5ag0986 Cone-Chr5:4227304 1.30E-199 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46164 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0986 K14431 - rcu:8270850 550.436