Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0992 ATGAGGAAGAAGCTCGACACCCGTTTTCCAGCCGCTCGAATCAAAAAGATAATGCAAGCAGATGAGGATGTTGGGAAGATAGCATTAGCAGTTCCTGTTTTAGTTTCCAAAGCATTGGAATTGTTTCTCCAAGACCTTTGTGATCGTACATATGAGATCACCCTTGAGAGAGGAGCCAAGACGATGAATTCATTGCATTTAAAACACTGTGTACAGAGCTATAATGTTTTTGATTTCCTGAGGGAAATTGTCAGCAGGGTTCCTGATTATGGCCATGGTCATGGTCATTCAGATGCTGCTGATGATAAAAAGAAAAGGAAACCCACTGGTGATGATTGCAATGACAGCGATGAAGAGTTGAAGAAGAGCAAGATGCATGAGATGGGCCACCACAGTGGCAGGGGTGGTGGTGCAAGAGGAAGAGGTAGGGGTCGAGGACGAGGCCGTGGACGGGCAAATCGAATGGCAGAAAGAGAGACTTGCCATCACGATCAGATCGAATCCGAGCCGTCCATTCTCCAACAGAACAACAACAGCAGCAAACAAAACTCATGTCCTAACATGCTTATAGATAACAGATCTGTCCCAGAGTCAAAAGAACTGTCAAGAGAAAGTGTCTCCGCAAGCAATGAAGCCAACAACCTTCCAGCACCACCTACTCAAAATATCGACTTAAATGCGGACTTAAACAGGAATTACGAGGACCCCACCAAGGTGGCCCTGGAAGCTGAGCCACCTGGCCCCACAACAGCAGGGCCCAGCACCAAAACTAAACATGAAGAGTACCCAGGCTGGTCTCTTACTGACGTGGACAAGATGAACATAGACCCAGTTCATCTCGCGCAGCTTACTACGAGATTAGACGAGGGCGATGAAGACTATGATGAGGACGAGGAAGAGTGA 903 47.18 MRKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLERGAKTMNSLHLKHCVQSYNVFDFLREIVSRVPDYGHGHGHSDAADDKKKRKPTGDDCNDSDEELKKSKMHEMGHHSGRGGGARGRGRGRGRGRGRANRMAERETCHHDQIESEPSILQQNNNSSKQNSCPNMLIDNRSVPESKELSRESVSASNEANNLPAPPTQNIDLNADLNRNYEDPTKVALEAEPPGPTTAGPSTKTKHEEYPGWSLTDVDKMNIDPVHLAQLTTRLDEGDEDYDEDEEE 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4277530 4282028 + Conep05aG0101800.1 Cone5ag0992 438010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0992 300 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 4 175 IPR050568 GO:0001046(PANTHER)|GO:0005634(PANTHER)|GO:0016251(PANTHER)
Cone5ag0992 300 FunFam dr1-associated corepressor homolog 1 86 - -
Cone5ag0992 300 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Cone5ag0992 300 MobiDBLite consensus disorder prediction 201 228 - -
Cone5ag0992 300 MobiDBLite consensus disorder prediction 150 166 - -
Cone5ag0992 300 MobiDBLite consensus disorder prediction 167 191 - -
Cone5ag0992 300 Coils Coil 280 300 - -
Cone5ag0992 300 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982(InterPro)
Cone5ag0992 300 MobiDBLite consensus disorder prediction 91 134 - -
Cone5ag0992 300 MobiDBLite consensus disorder prediction 91 262 - -
Cone5ag0992 300 SUPERFAMILY Histone-fold 4 97 IPR009072 GO:0046982(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag0992 Cone-Chr5:4277530 Cone5ag1421 Cone-Chr5:8944071 8.48E-56 dispersed
Cone1ag0827 Cone-Chr1:54103338 Cone5ag0992 Cone-Chr5:4277530 5.72E-176 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46165 PF00076 RRM_1 5.20E-09 CL0221 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0992 K21752 - gmx:100810093 313.923