Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0995 ATGGGGCCGAAAATGATACACATTGTAGCAATTTTATGGACGTTTTTTTTTATTGAAGCTAGCATGGCTATGCATGCACATCATGTGCCTGCACATTTCTTGGATGATACAATACCAATTCCAGAAGATAAGGCCCAAGTTGAGACATGGTTTTCGAACATCATTAGACCCGCTGGGGAACGAAAAGCGATATTAGACCCTGCACTTGTTGTTGCCGAAGAAGGTGTAAGGGTTATTAGGGTTATGCAAGATGGAAGGGGACATTTCAGAACAATCACGCAAGCTGTTAATAGTATTCCTGTCGGAAATACAAAACGTGTTATTGTGTGGATTGGAGGTGGGCATTATCGAGAGAAGGTTAAGATTGAAAAAACAAAGCCGTTTGTCACGTTATATGGGAGTCCTAAGAACATGCCGAACATATCATTTGACGGCACTGCACTGCAATATGGCACAGTTGATAGCGCTACATTGATTGCAGAATCTGATTACTTTCAAGCTGTTAATATCGTCATTGACAATTGCGCGCCAAGGCCGGATGGTAAAAGAAAAGGAGCACAAGCAGTTGCATTGAGGATCTCAGGAGACAAAGCAGCATTCTATAATTGTAAGATTCATGGATTCCAAGACACACTTTGTGATGATAGAGGAACGCATTTGTTCAAGGACTGTTTCATTCAAGGAAGTGTCGATTTCATATTCGGAAGCGGGACATCTATTTATCTAAGCACCGAACTAAATGTTATCGAGGGTTATGGATTCACGGTGATCACTGCACAGGCAAGGGAAACTGACTCCGACACGAGCGGATATTCATTTGTTCATAGCCGTGTAACTGGATATAGCAATGGAACATACTTAGGTAGGGCATGGAAGTCTCATCCTCGAGTCATCTATGCCTATACCGACATGGGAAATGTTGTCAAACCTTCAGGATGGAGTAACAGCTTCCGACCAGAAGTTGAAAAAACGGTGCTGTTTGGAGAATACAAGTGCTCAGGACCGGGGGCAGATCCTGATGTTCGCGAGAAATTTAGCAAGCACTTAACGGAGGCACAAGTAAGACCATTTATAAGCTTGGGTTTTATCCATGGTTCAAAGTGGTTGCTTCCTCCTTACAGTCCTGAAAGGTAG 1134 42.95 MGPKMIHIVAILWTFFFIEASMAMHAHHVPAHFLDDTIPIPEDKAQVETWFSNIIRPAGERKAILDPALVVAEEGVRVIRVMQDGRGHFRTITQAVNSIPVGNTKRVIVWIGGGHYREKVKIEKTKPFVTLYGSPKNMPNISFDGTALQYGTVDSATLIAESDYFQAVNIVIDNCAPRPDGKRKGAQAVALRISGDKAAFYNCKIHGFQDTLCDDRGTHLFKDCFIQGSVDFIFGSGTSIYLSTELNVIEGYGFTVITAQARETDSDTSGYSFVHSRVTGYSNGTYLGRAWKSHPRVIYAYTDMGNVVKPSGWSNSFRPEVEKTVLFGEYKCSGPGADPDVREKFSKHLTEAQVRPFISLGFIHGSKWLLPPYSPER 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4291864 4293341 - Conep05aG0102100.1 Cone5ag0995 438013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0995 377 ProSitePatterns Pectinesterase signature 2. 226 235 IPR033131 -
Cone5ag0995 377 FunFam Pectinesterase 74 371 - -
Cone5ag0995 377 Gene3D - 75 373 IPR012334 -
Cone5ag0995 377 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 28 369 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
Cone5ag0995 377 SUPERFAMILY Pectin lyase-like 78 371 IPR011050 -
Cone5ag0995 377 Pfam Pectinesterase 80 365 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag0622 Cone-Chr3:3079181 Cone5ag0995 Cone-Chr5:4291864 3.87E-128 dispersed
Cone5ag0995 Cone-Chr5:4291864 Cone5ag1415 Cone-Chr5:8855432 2.38E-158 dispersed
Cone5ag0995 Cone-Chr5:4291864 Cone7ag1167 Cone-Chr7:8690853 2.36E-75 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0995 K01051 - gmx:100775404 475.707