Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0997 ATGCCGGACGTGCAAGCCCTTGTGAATAATTTTCTTAACAAGCTTAAGAAACGTAAAATTGAGGGCTCACAGGCCACGTCAAGGCAGACAGCTGAATTGCTAAGGTCGTTTATCTCACAGCAGCGAGTACCATACACAAATCAGGCTGGAGCATTAATTGATGCTGTGAAGGCTGTTGGCGAGCTGCTGATTGCTGCAAATCCTGTTGAGCTCGCTGTGGGTAACATTGTGAGGCGTGTTTTGCATATTATTAGAGAGGAGGATCTCTCTCTCACTACTGCTGCTGTTGGTGGATTGAGCTTATCAGCTGTAAGTGACGATGAAGATGACACTGAGAGAGATGATCACCCTGCTCTATCAGCTGCTGCTGCAAGGAGCACTCTGCGTCCTCCTTCCTTGCAAACTCTACTCGAAGGTGCTCCTGACTCAGCAGCCATTCCTCACACTTCTTCATCTGGAGGTGATTCTGAGGGAAAAGGCAAATCTGCTGATAAAAGTTCAAGAGGTAGAAAGTTGAAGCATGATGTCATTGAAGCAGTTAATGAACTTATTCAAGATATTACGACTTGCCATGAACAAATAGCTGAGCAAGCAGTAGAACACATCCATCAAAATGAGGTCATTTTAACCCTGGGAAGCTCCAGAACAGTTTTGGAGTTTCTCTGTGCTGCAAAGGAGAAAAAGAGGTCCTTCCGTGTATTTGTTGCTGAGGGTGCTCCCAGGTATCAAGGGCATCTTCTTGCCAAAGATTTAGTAACCAGAGGCTTACAAACTACACTTATAACTGACTCTGCAGTTTTTGCCATGATTTCACGGGTGAACATGGTAATAGTTGGAGCTCATGCGGTCATGGCCAATGGTGGGGTTATAGCTCCTGTTGGATTAAATATGGTTGCACTTGCAGCTCAAAGGCATGCTGTGCCTTTTGTTGTACTTGCTGGAAGTCACAAGCTGTGCCCCTTGTATCCACACAATCCCGAGGTCTTACTCAATGAGCTAAGATCCCCATCTGAGCTACTAGATTTTGGAGAATTTTCTGATTGCATGGACTTCGGAAGTACCACTGATTCTCCTCTTCTCCATGTGGTCAATCCAACATTTGACTATGTACCACCAAAACTCGTCAGCCTGTTTATTACTGACACAGGAGGTCATAGCCCATCATACATGTACCGGCTCATTGCTGATTATTACTCTGCTGATGATTTGGTGGTCCAGAGAAGACTTTCTCCAGGAAGTTGA 1242 45.25 MPDVQALVNNFLNKLKKRKIEGSQATSRQTAELLRSFISQQRVPYTNQAGALIDAVKAVGELLIAANPVELAVGNIVRRVLHIIREEDLSLTTAAVGGLSLSAVSDDEDDTERDDHPALSAAAARSTLRPPSLQTLLEGAPDSAAIPHTSSSGGDSEGKGKSADKSSRGRKLKHDVIEAVNELIQDITTCHEQIAEQAVEHIHQNEVILTLGSSRTVLEFLCAAKEKKRSFRVFVAEGAPRYQGHLLAKDLVTRGLQTTLITDSAVFAMISRVNMVIVGAHAVMANGGVIAPVGLNMVALAAQRHAVPFVVLAGSHKLCPLYPHNPEVLLNELRSPSELLDFGEFSDCMDFGSTTDSPLLHVVNPTFDYVPPKLVSLFITDTGGHSPSYMYRLIADYYSADDLVVQRRLSPGS 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4296577 4309578 - Conep05aG0102300.1 Cone5ag0997 438015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0997 413 MobiDBLite consensus disorder prediction 142 172 - -
Cone5ag0997 413 MobiDBLite consensus disorder prediction 158 172 - -
Cone5ag0997 413 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT BETA 3 404 IPR051855 GO:0003743(PANTHER)|GO:0005085(PANTHER)|GO:0005851(PANTHER)|GO:0006413(PANTHER)
Cone5ag0997 413 FunFam translation initiation factor eIF-2B subunit beta 190 398 - -
Cone5ag0997 413 Pfam Initiation factor 2 subunit family 19 386 IPR000649 GO:0044237(InterPro)
Cone5ag0997 413 SUPERFAMILY NagB/RpiA/CoA transferase-like 8 402 IPR037171 -
Cone5ag0997 413 Gene3D - 190 397 IPR042529 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag1363 Cone-Chr20:8743825 Cone5ag0997 Cone-Chr5:4296577 9.93E-20 dispersed
Cone1ag0825 Cone-Chr1:54088214 Cone5ag0997 Cone-Chr5:4296577 1.21E-270 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0997 K03754 - rcu:8270898 708.368