Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0998 ATGGCAACTAGACATTCTTTTGTTGATGACATGCAAATTAAATCGGAGGTTATTGATCTTCCCCAAAATGAAGATGCTATGGAGATAGAAGAAAATGTAAATGATCTTGTGCAAGATGGACTAAAACCTAATTTGACAGTTAGGAGCAATGTCCGAGAGCTTTTGGAGTGTCCAGTGTGCTTAAATGCTATGTACCTTCCTATTCATCAGTGCTCAAATGGCCATACACTGTGCTCAAGTTGTAAGCCTAGAGTCCACAATCAGTGTCCCACTTGCAGGCATGAGCTTGGAAATATAAGATGCCTTGCACTGGAAAAGGTGGCTGCTTCTCTTGAACTTCCATGTAAATATCATAGTTTTGGTTGCATAGGCGTATACCCTTATTACAGCAAGCCTAAGCATGAGTCACAATGTGTCCATCGACCTTATAGCTGTCCCTACGCTGGATCAGAATGCTCAGTCATTGGTGATATCCCTTTTCTGGTGACCCACCTGAAAGATGACCACAAAGTTGACATGCATAATGGAAACACATTTAACCATCGTTATGTCAAATCGAATCCACAAGAGGTTGAAAATGCCACGTGGATGCTAACGGTTCTCAGTTGCTTCGGTCAGTATTTCTGTCTGCATTTCGAAGCTTTCCAGCTCGGTATGTCTCCAGTGTACATAGCTTTCTTGCGGTTTATGGGCGATGAGAACGAGGCGAAGAGCTACAGCTACAGTCTAGAGGTCGGTGGAAATGGGAGGAAGATGGTTTGGCAAGGTATGCCTAGAAGCATCAGGGACAGCCATAGGAAGGTCCGTGATAGTTTTGATGGTCTAATCATATGCCGGAGTATGGCTCTCTTCTTCTCTGGAGGAGATAAGAAGGAATTGAAGCTTAGAGTGACTGGTAGGATATGGAAAGAACAGTAA 918 43.46 MATRHSFVDDMQIKSEVIDLPQNEDAMEIEENVNDLVQDGLKPNLTVRSNVRELLECPVCLNAMYLPIHQCSNGHTLCSSCKPRVHNQCPTCRHELGNIRCLALEKVAASLELPCKYHSFGCIGVYPYYSKPKHESQCVHRPYSCPYAGSECSVIGDIPFLVTHLKDDHKVDMHNGNTFNHRYVKSNPQEVENATWMLTVLSCFGQYFCLHFEAFQLGMSPVYIAFLRFMGDENEAKSYSYSLEVGGNGRKMVWQGMPRSIRDSHRKVRDSFDGLIICRSMALFFSGGDKKELKLRVTGRIWKEQ 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4312321 4314094 - Conep05aG0102500.1 Cone5ag0998 438016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0998 305 FunFam E3 ubiquitin-protein ligase SINAT5-like 166 298 - -
Cone5ag0998 305 ProSiteProfiles Zinc finger SIAH-type profile. 110 170 IPR013010 GO:0008270(InterPro)
Cone5ag0998 305 SUPERFAMILY RING/U-box 46 99 - -
Cone5ag0998 305 SUPERFAMILY TRAF domain-like 110 302 - -
Cone5ag0998 305 Pfam Sina, zinc finger 106 181 - -
Cone5ag0998 305 FunFam E3 ubiquitin-protein ligase SINAT3 109 165 - -
Cone5ag0998 305 CDD RING-HC_SIAHs 55 93 - -
Cone5ag0998 305 ProSiteProfiles Zinc finger RING-type profile. 57 93 IPR001841 -
Cone5ag0998 305 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 162 298 IPR008974 GO:0005515(InterPro)
Cone5ag0998 305 Pfam Sina, TRAF-like domain 201 298 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Cone5ag0998 305 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 57 92 IPR049548 -
Cone5ag0998 305 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 109 IPR013083 -
Cone5ag0998 305 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 39 300 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
Cone5ag0998 305 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 161 IPR013083 -
Cone5ag0998 305 CDD Sina 171 299 - -
Cone5ag0998 305 FunFam E3 ubiquitin-protein ligase SINAT5-like 15 108 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0539 Cone-Chr16:7399522 Cone5ag0998 Cone-Chr5:4312321 3.22E-27 dispersed
Cone1ag1491 Cone-Chr1:57102647 Cone5ag0998 Cone-Chr5:4312321 1.12E-188 dispersed
Cone5ag0687 Cone-Chr5:2947117 Cone5ag0998 Cone-Chr5:4312321 4.32E-167 dispersed
Cone5ag0998 Cone-Chr5:4312321 Cone5ag0480 Cone-Chr5:2021704 1.71E-191 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0998 K04506 - vvi:100244678 564.688